PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA04G21910.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GRAS
Protein Properties Length: 619aa    MW: 64918.2 Da    PI: 7.5717
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA04G21910.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS283.65.5e-872626192374
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                      ++lL e+A a+++g++e a + L+ l+  a+++gd  qRl+a+++ AL++r+ +       + ++ +       e+ a  +l++++sP+++++ 
  ONIVA04G21910.1 262 RQLLSEAAAAIADGHNETAATHLTALKRAANSRGDVEQRLVAMMVAALSSRIGQ-------TASVPDI---CGGETRAGSQLLHDISPCFRLAL 345
                      689**************************************************9.......1111122...24455566789************ PP

             GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl 189
                       +aN aI++av  ++++H +Dfd+s + Q + L++ La+R+ +  sl++T+v +p+s  ++++ +t   L+k+Ae+ g++ +f++ v+ r  ++
  ONIVA04G21910.1 346 HAANVAIVDAVGDHRAIHLVDFDVSAP-QHADLIRCLAARRLPGTSLKVTAVTDPASPFTQSVTAT-LHLQKLAERAGIDYRFKM-VSCRAGEI 436
                      ************************987.99************************987666666555.57***************9.7999**** PP

             GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                      e ++L ++ gEalaVnl+++l +++desvs +++rde+L+ v+ l P+vv +veqe++ n++++ +rf++a+ +y a+++sl+a++pres er+
  ONIVA04G21910.1 437 EASKLGCEAGEALAVNLAFALSHVPDESVSPANPRDEILRRVRALGPQVVALVEQELNSNTAPLTTRFTDACAHYGAILESLDATIPRESAERA 530
                      ********************************************************************************************** PP

             GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                        E++ lg ++ n+va ega+r er+e ++kWr+r+++aGF+pv+l+  +a+q+ +    v+  g+ v+ e+g l lgW++r ++++SaWr
  ONIVA04G21910.1 531 RAEAA-LGGRAANAVAREGADRLERCEVFGKWRSRFGMAGFRPVALGPGIADQVLARQGPVA-AGFAVKAENGVLRLGWMGRVVTVASAWR 619
                      ****9.9999*******************************************977777777.99*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 619 aa     Download sequence    
MEPGAPWRDP RQGYLYGVGS AVQMPMQQRS DAAAAGGVLK RSLGDMERWQ QHQHQQRQIA  60
MQQQLYLRTV RQRTAAASAA VSPLTSADIA AVLGGPPSQP LVLSGSSMGG AFGSPSSTLS  120
SITTASRAVA MPLMQPQLQR QQQVTYMASS PQVQAFGTAR ALPPAPATSD LSILQELEKQ  180
LLGDDDEVEA AMSGTGSAVT GSEWEEQLNS ITAAPSPPLT AATTPNNNNN AVGMTRSPSN  240
SSTSTASSSA SCSPPTSATT SRQLLSEAAA AIADGHNETA ATHLTALKRA ANSRGDVEQR  300
LVAMMVAALS SRIGQTASVP DICGGETRAG SQLLHDISPC FRLALHAANV AIVDAVGDHR  360
AIHLVDFDVS APQHADLIRC LAARRLPGTS LKVTAVTDPA SPFTQSVTAT LHLQKLAERA  420
GIDYRFKMVS CRAGEIEASK LGCEAGEALA VNLAFALSHV PDESVSPANP RDEILRRVRA  480
LGPQVVALVE QELNSNTAPL TTRFTDACAH YGAILESLDA TIPRESAERA RAEAALGGRA  540
ANAVAREGAD RLERCEVFGK WRSRFGMAGF RPVALGPGIA DQVLARQGPV AAGFAVKAEN  600
GVLRLGWMGR VVTVASAWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.12e-88GRAS family protein