PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA04G21750.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C3H
Protein Properties Length: 1258aa    MW: 136894 Da    PI: 6.7117
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA04G21750.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.53.5e-0612381257525
                       --SGGGGTS--TTTTT-SS-S CS
          zf-CCCH    5 lCrffartGtCkyGdrCkFaH 25  
                       +Cr ++++G+C+ G +C+F H
  ONIVA04G21750.1 1238 ICR-YYENGYCRKGTSCQFLH 1257
                       799.6666************* PP

Sequence ? help Back to Top
Protein Sequence    Length: 1258 aa     Download sequence    
MLKLLEMHFH AKETVNGDGQ KGIDSDSAQI DSGGYSDMPS KLCSDNKRKI HKKIERESPA  60
NLEDYAAIDM HNINLIYLRR SLLEDLIDDN GTFSDKITGA FVRIRTPCVG QKQDIYRLVK  120
VLGTHKVAER YSVGKKTTDH ALEILNLDKK EEECKRLRQS MKCGLITRLK VGDIHEKAKI  180
FQLLRVNDWL ENEKQRLSHL RDRAKKLQLL GTPEERARII NEDPEVHADP CMSPDYESAE  240
ELDAKKAVDS TSRNGSDLLF LGRKGIETNS LQNHRQNCSA TSHHTTTSPP TEGMTHGQGE  300
EASFASSEIV SGDMEPEKVW HYKDPSGSVQ GPFTLLQLSK WAAYFPRDLR IWLTFESEQN  360
SLLLNEVLSK QQKDFIQPSP KVDNNRSTWE GVGQDRVDSS LTGNNSSSPI GYNVIYSSRL  420
PSPSADYRAS AREGPNLPSG TLPFMTSQKT QKDPQMLHGQ AQHQGDYSCT IPSSVVSYRP  480
AGSHDEWPPR GNIGEWNNSQ DSGGMWSPTT PHMSRSNLEH QPDRCITKKQ LQNDSKRNTL  540
AGSAENLNSQ MDFGSQKVHI PTPQQPERDL ATSVGTSRQF EFKTCHQEGS HWSSTADSIT  600
HDGLQLSLAS AKPESCSAVN PIRDGDSSSA SRVPNQSGAH VYSPPHPATT NLSKSEETMN  660
QCKSCEPEAS NKSRKPDASH APVNQHPKPE SDPVLPDTQD FERTHPSPST EHDTKEQLKD  720
QSRSTSVAPE GSGTKAHGQS SIAFISEASG PLSSKIVGLQ PPKDTSFLVE RDIKDGGSIT  780
QTEQQKEEST AFKKENVAVD PISDSEAIVS GVLESLTETY NLHEETALEN FTPTSAEEEQ  840
PQCSTPIALS PWDETSDYQG EAVDSALWGV QDDQNNEMWS LSSPTPTLQP SGIGADTKGA  900
SCAIEEVIVA QGNSGVVEPS PALEKKRIEK VPSASIDRGV PEQVKPKSDA ALSPEESRKP  960
SGLQLSSTYL QGSTKSSGLP PSGTSLDGGI EPSGLLPSGT SLEWGTKISG VQSSASSLEG  1020
SKKAFVRQPS GSSLEGNTKA SGRQPSGSSI EGSKKPSDRQ PSGASQEGNT KPSGWQQSVS  1080
SLEGGTKPSG WKPSISIDTN TKASGSSKAS GWQPSPRESS KSKPNSTWGA GQSRNSSSHQ  1140
STTPTAKYSS ETPRRQGNNN TNSAGWGDSL GNKSWHSPSG NASSRGSHSS HHHDRHNQSS  1200
EPWRGGSNHS RRSDHRQEHG NGGSSRSSSS RGQSQRGICR YYENGYCRKG TSCQFLHR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51120.12e-69C3H family protein