PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA04G20460.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

C2H2

Protein Properties

Length: 644aa MW: 66631.1 Da PI: 8.5665

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA04G20460.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.6e-05	128	150	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F r nL+ H r H ONIVA04G20460.1 128 FVCEVCNKGFQREQNLQLHRRGH 150 89*******************88 PP
2	zf-C2H2	11.5	0.00096	205	227	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H + + ONIVA04G20460.1 205 WKCDKCSKRYAVQSDWKAHSKIC 227 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 644 aa Download sequence
MASNSSAAAA AAFFGISRDG DQHDQIKPLI SHQQHQHQHQ QLAASLTGVA TAAPTAASSQ 60 GAPPAAPPAK KKRNLPGNPS NQPKYPFTIS AMHAYISVLR DLVSIDWTDP DAEVIALSPK 120 TLLATNRFVC EVCNKGFQRE QNLQLHRRGH NLPWKLKQKN PAQAQRRRVY LCPEPTCVHH 180 DPARALGDLT GIKKHFCRKH GEKKWKCDKC SKRYAVQSDW KAHSKICGTR EYRCDCGTLF 240 SRRDSFITHR AFCDALAQES SRLPPTSLSS LTSHLYGASN AGNMALSLSQ VGSHLTTSLQ 300 DGGGHHHHPS PELLRLGGAG GGGGAGGGSS IAARLDHLLS PSGASAFRPP QPAFFLNAAA 360 AAAATGQDFG DDAGNGQHSF LQAKPFHGLM QLPDLQGNGA GGPGAPGPNL FNLGFFANNG 420 NSSGSSHEHA SQGLMSNDQF SGGAGGGGGS DASAAGIFGG NFVGGDHVSP AGLYNDQAAM 480 LPQMSATALL QKAAQMGATS SANGPGSMFR GFVGSSPHMR PAAQHMDQSD AHLNDLMNSL 540 AGGGVNAAAM FGGTNGGGVP GAGMFDPRLC DIEHEVKFSQ GGGGGGGAGA GTGDGTRDFL 600 GVGGGGIVHG MSTPRGDHHQ SSSDMSSLEA EMKSASSFNG RRMP

Sequence ? help Back to Top

Protein Sequence Length: 644 aa Download sequence

MASNSSAAAA AAFFGISRDG DQHDQIKPLI SHQQHQHQHQ QLAASLTGVA TAAPTAASSQ  60
GAPPAAPPAK KKRNLPGNPS NQPKYPFTIS AMHAYISVLR DLVSIDWTDP DAEVIALSPK  120
TLLATNRFVC EVCNKGFQRE QNLQLHRRGH NLPWKLKQKN PAQAQRRRVY LCPEPTCVHH  180
DPARALGDLT GIKKHFCRKH GEKKWKCDKC SKRYAVQSDW KAHSKICGTR EYRCDCGTLF  240
SRRDSFITHR AFCDALAQES SRLPPTSLSS LTSHLYGASN AGNMALSLSQ VGSHLTTSLQ  300
DGGGHHHHPS PELLRLGGAG GGGGAGGGSS IAARLDHLLS PSGASAFRPP QPAFFLNAAA  360
AAAATGQDFG DDAGNGQHSF LQAKPFHGLM QLPDLQGNGA GGPGAPGPNL FNLGFFANNG  420
NSSGSSHEHA SQGLMSNDQF SGGAGGGGGS DASAAGIFGG NFVGGDHVSP AGLYNDQAAM  480
LPQMSATALL QKAAQMGATS SANGPGSMFR GFVGSSPHMR PAAQHMDQSD AHLNDLMNSL  540
AGGGVNAAAM FGGTNGGGVP GAGMFDPRLC DIEHEVKFSQ GGGGGGGAGA GTGDGTRDFL  600
GVGGGGIVHG MSTPRGDHHQ SSSDMSSLEA EMKSASSFNG RRMP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02670.1	7e-99	C2H2 family protein

Link Out ? help Back to Top
Ensembl	ONIVA04G20460.1