PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA04G19300.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C3H
Protein Properties Length: 496aa    MW: 51674.6 Da    PI: 4.5402
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA04G19300.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.87.7e-08379405227
                      -S---SGGGGTS.--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartG.tCkyGdrCkFaHgp 27 
                      kt+lC  ++  G  C++G++Ck+aHg+
  ONIVA04G19300.1 379 KTKLCAEYYSRGlGCPRGNTCKYAHGE 405
                      7999988888888************96 PP

2zf-CCCH26.31.2e-08440466127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      ykt+lC++f  +G C + ++C+FaHg+
  ONIVA04G19300.1 440 YKTKLCKTFTSGGLCLFAANCRFAHGE 466
                      9************************96 PP

Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    
MADSEDGDHA ATTTTEQRYD DDGHLVPSSG GQEEEGSGGR DVVVPGGHVA EDYRSGVGVP  60
VGRDAGGATS SPPQPVHVTP SILVGSIHAP VFQGELVGMK FGVGSCSMGA GTSATRRLPA  120
TGFGALPTSS MAEDSADHAD DDHLAEEEEE EEEEHYIDDG PLVPSSGGQE EEGSGGRHVF  180
VPGGHDGEED HPDDLVADLD LDLLVDGVVG PVPGGHLNAD APAFVPTTRG RQDLYSALSS  240
SAPAAGYRYR HYITSSALAE AGHVSPFLGL PYATAFDSPL DRELVGPSSA PPPCSAASRA  300
WLVRCSSPLS DSEWTRRSIL AREAAHTPAS TVTGRGRFEF VPIPGAPYAP PPSFAPIAAG  360
AGPAARPQQQ LAFGLEEHKT KLCAEYYSRG LGCPRGNTCK YAHGEDDLRL VVAVSSLADA  420
GEGSSSSDSS SAALGGEDKY KTKLCKTFTS GGLCLFAANC RFAHGEVELG KKEPCWYFFS  480
GQTCPRGDTC GFRHSY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.13e-08C3H family protein