PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA04G19300.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | C3H | ||||||||
Protein Properties | Length: 496aa MW: 51674.6 Da PI: 4.5402 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23.8 | 7.7e-08 | 379 | 405 | 2 | 27 |
-S---SGGGGTS.--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartG.tCkyGdrCkFaHgp 27 kt+lC ++ G C++G++Ck+aHg+ ONIVA04G19300.1 379 KTKLCAEYYSRGlGCPRGNTCKYAHGE 405 7999988888888************96 PP | |||||||
2 | zf-CCCH | 26.3 | 1.2e-08 | 440 | 466 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ykt+lC++f +G C + ++C+FaHg+ ONIVA04G19300.1 440 YKTKLCKTFTSGGLCLFAANCRFAHGE 466 9************************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 496 aa Download sequence |
MADSEDGDHA ATTTTEQRYD DDGHLVPSSG GQEEEGSGGR DVVVPGGHVA EDYRSGVGVP 60 VGRDAGGATS SPPQPVHVTP SILVGSIHAP VFQGELVGMK FGVGSCSMGA GTSATRRLPA 120 TGFGALPTSS MAEDSADHAD DDHLAEEEEE EEEEHYIDDG PLVPSSGGQE EEGSGGRHVF 180 VPGGHDGEED HPDDLVADLD LDLLVDGVVG PVPGGHLNAD APAFVPTTRG RQDLYSALSS 240 SAPAAGYRYR HYITSSALAE AGHVSPFLGL PYATAFDSPL DRELVGPSSA PPPCSAASRA 300 WLVRCSSPLS DSEWTRRSIL AREAAHTPAS TVTGRGRFEF VPIPGAPYAP PPSFAPIAAG 360 AGPAARPQQQ LAFGLEEHKT KLCAEYYSRG LGCPRGNTCK YAHGEDDLRL VVAVSSLADA 420 GEGSSSSDSS SAALGGEDKY KTKLCKTFTS GGLCLFAANC RFAHGEVELG KKEPCWYFFS 480 GQTCPRGDTC GFRHSY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66810.1 | 3e-08 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | ONIVA04G19300.1 |