PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA04G19260.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

C2H2

Protein Properties

Length: 311aa MW: 32709.4 Da PI: 7.69

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA04G19260.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.2	0.00013	5	26	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ C ++F ++ L H+r+H ONIVA04G19260.1 5 TCKLCYRRFGNPRALAGHMRSH 26 6********************9 PP
2	zf-C2H2	11.6	0.00088	174	196	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C+k+F++ L H +H ONIVA04G19260.1 174 FQCPACKKVFRSYQALGGHRASH 196 89**********99999998887 PP

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence
MAKNTCKLCY RRFGNPRALA GHMRSHSVAA SRSQISSTSS ASTSVAVGDD DGGGDAKRPI 60 QGYVLREKPK RRVRLAESDF SDRESETEYY SSPPHGKRAN TGSGDVEQVS SVSDATSEED 120 VALSLMMLSR DTWPATPPPP PPYRLRGAGY DDGSDGGDAP PAPAAAAAQK RTRFQCPACK 180 KVFRSYQALG GHRASHMRGG RGGCCAPPPN PPPSPATPLQ PLPECDGGEE EGAKPHPHEC 240 PYCFRVFASG QALGGHKRSQ LCSAAAAAAS GDDLPAMIKS NGFIDLNLPA PFDDVELSAV 300 SDPFLSSKPG S

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	68	74	KPKRRVR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60580.1	3e-27	C2H2 family protein

Link Out ? help Back to Top
Ensembl	ONIVA04G19260.1