PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA04G19000.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 247aa MW: 27305.1 Da PI: 8.9349 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.8 | 2.1e-19 | 81 | 135 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q +Le+ F+++++++ ++++ LA++lgL rqV vWFqNrRa+ k ONIVA04G19000.1 81 RKKLRLSKDQSAVLEDSFREHPTLNPRQKATLAQQLGLRPRQVEVWFQNRRARTK 135 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 129 | 2e-41 | 81 | 170 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rlsk+q+++LE+sF+e+ +L+p++K++la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +l ONIVA04G19000.1 81 RKKLRLSKDQSAVLEDSFREHPTLNPRQKATLAQQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRRLQKEVQELR-AL 170 69*************************************************************************************9.55 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence |
MMERAEDLRL SLSLSSPLIA PRTHHVAMLF HAPPEKRFLE MPLLPAAKRS EVVAAEEERA 60 GLRGGGGSDE EDGGCGIDGS RKKLRLSKDQ SAVLEDSFRE HPTLNPRQKA TLAQQLGLRP 120 RQVEVWFQNR RARTKLKQTE VDCEFLKRCC ETLTEENRRL QKEVQELRAL KLVSPHLYMN 180 MSPPTTLTMC PSCERVSNTN NNSSAAAAAD RRGIRTTTAA AGGSVVDTAA DGGILCHRPI 240 AVRPQQS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 80 | 86 | SRKKLRL |
2 | 130 | 138 | RRARTKLKQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44910.1 | 3e-65 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Ensembl | ONIVA04G19000.1 |