PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA04G18550.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family HD-ZIP
Protein Properties Length: 276aa    MW: 30653.1 Da    PI: 5.0075
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA04G18550.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.71.1e-1974127456
                      -SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   4 RttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      +++ft+eq++ Le++F+  + ++  +e++eLA++lgL+ rqV +WFqN+Ra+++
  ONIVA04G18550.1  74 KRRFTEEQIRSLESMFHAhHAKLEPREKAELARELGLQPRQVAIWFQNKRARWR 127
                      458**************9899********************************9 PP
2HD-ZIP_I/II125.13.2e-4072165193
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                      e+krr+++eq+++LE++F++++ kLep++K+elareLglqprqva+WFqn+RAR+++kqlE+dy+aL+++ydal+++ e+L++e+ +L+ +l+e
  ONIVA04G18550.1  72 ERKRRFTEEQIRSLESMFHAHHaKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQLEHDYAALRSKYDALHSRVESLKQEKLALTVQLHE 165
                      69******************999******************************************************************99986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    
MNGRTQLASW ARIAMDRGDH HHLQQQHQFL MPPPAPVVPP QLCMPAMMAD EQYMDLGGGG  60
AAAAPGRGGA GERKRRFTEE QIRSLESMFH AHHAKLEPRE KAELARELGL QPRQVAIWFQ  120
NKRARWRSKQ LEHDYAALRS KYDALHSRVE SLKQEKLALT VQLHELRERL REREERSGNG  180
GAATTAASSS SCNGSGSEEV DDDDDKRNAA AGCLDLEPPE SCVLGGATCA TPADVSVESD  240
QCDDQLDYDE GLFPESFCAT PELWEPWPLV EWNAVA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.18e-35HD-ZIP family protein