PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA04G13890.4

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

WRKY

Protein Properties

Length: 527aa MW: 54763.6 Da PI: 5.2914

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA04G13890.4	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.7	7.8e-31	308	365	2	60
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 +Dgy+WrKYGqK+vk se+prsYY+Ct+a+C vkkkvers+ +++v+ei+Y+g+Hnh+k ONIVA04G13890.4 308 EDGYSWRKYGQKQVKHSEYPRSYYKCTHASCAVKKKVERSH-EGHVTEIIYKGTHNHPK 365 8**************************************.*************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 527 aa Download sequence
MAFLIVYVPF AIWWGEMEGD IAMEEWKDSN HRGADYLMTM PMQNFLADAF PPPELLEGEG 60 GFEKHGLSVA VGSPPPTPPP PEDGCSPLPL TPQFGQKFGS GGGGGGGSLA DRRARGGFSN 120 VARISVPYNQ PVADVSSAGA PSPYVTIPPG LSPTTLLESP VFFSNAMGQA SPTTGKLHML 180 GGANDSNPIR FESPPIEEGS GAFSFKPLNL ASSQYAAAEK TKSLPNNQHQ SLPISVKTEA 240 TSIQTAQDEA AANQLMQPQF NGGKRSRAAP DNGGDGEGQP VEGDAKADSS SGAAAVAVVA 300 AAAAAVAEDG YSWRKYGQKQ VKHSEYPRSY YKCTHASCAV KKKVERSHEG HVTEIIYKGT 360 HNHPKPAASR RPPVHPPPPS PATTTTTPLP PGDAQADHAP DGGGGSTPVG AGQAGAEWHN 420 GGVVGGEGLV DATSSPSVPG ELCESTASMQ VHEGAAAAQL GESPEGVDVT SAVSDEVDRD 480 DKATHVLPLA AAAADGESDE LERKRRSHTH QYHCPLCSFH GIAREIV

Sequence ? help Back to Top

Protein Sequence Length: 527 aa Download sequence

MAFLIVYVPF AIWWGEMEGD IAMEEWKDSN HRGADYLMTM PMQNFLADAF PPPELLEGEG  60
GFEKHGLSVA VGSPPPTPPP PEDGCSPLPL TPQFGQKFGS GGGGGGGSLA DRRARGGFSN  120
VARISVPYNQ PVADVSSAGA PSPYVTIPPG LSPTTLLESP VFFSNAMGQA SPTTGKLHML  180
GGANDSNPIR FESPPIEEGS GAFSFKPLNL ASSQYAAAEK TKSLPNNQHQ SLPISVKTEA  240
TSIQTAQDEA AANQLMQPQF NGGKRSRAAP DNGGDGEGQP VEGDAKADSS SGAAAVAVVA  300
AAAAAVAEDG YSWRKYGQKQ VKHSEYPRSY YKCTHASCAV KKKVERSHEG HVTEIIYKGT  360
HNHPKPAASR RPPVHPPPPS PATTTTTPLP PGDAQADHAP DGGGGSTPVG AGQAGAEWHN  420
GGVVGGEGLV DATSSPSVPG ELCESTASMQ VHEGAAAAQL GESPEGVDVT SAVSDEVDRD  480
DKATHVLPLA AAAADGESDE LERKRRSHTH QYHCPLCSFH GIAREIV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	504	508	KRRSH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56270.1	3e-39	WRKY family protein

Link Out ? help Back to Top
Ensembl	ONIVA04G13890.4