PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA04G12350.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | GRAS | ||||||||
Protein Properties | Length: 152aa MW: 16559.1 Da PI: 9.7065 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 49.9 | 5.9e-16 | 2 | 66 | 259 | 323 |
GRAS 259 ealeyysalfdsl.eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaG 323 + l+yy+a fd++ +a+l ++s +r+kvE++ ++rei+n+va egaer+erhe+++ r+r+e+ G ONIVA04G12350.1 2 HYLRYYAAAFDAVdAAGLLETSPARAKVEEM-FAREIRNAVAFEGAERFERHESFAGRRRRMEDGG 66 679**********9999**************.******************************9976 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 152 aa Download sequence |
MHYLRYYAAA FDAVDAAGLL ETSPARAKVE EMFAREIRNA VAFEGAERFE RHESFAGRRR 60 RMEDGGGLQW GSKAEEKCLL PSSSLARRPR RQPSPPVSLR PDGSLPPAVA AAPLVLPLPR 120 ASAAEPPRCA PMPPTAAPLV LPPPLPTEKE RI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 48 | 61 | RFERHESFAGRRRR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G63100.1 | 1e-06 | GRAS family protein |
Link Out ? help Back to Top | |
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Ensembl | ONIVA04G12350.1 |