PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA04G11850.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ARF
Protein Properties Length: 694aa    MW: 77052 Da    PI: 6.0294
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA04G11850.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.71e-23126226198
                      EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                      f+k+lt sd++++g +++ +++aee+      ++++++ ++l+ +d++g +W +++i+r++++r++lt+GW+ Fv++++L +gD ++F   + +
  ONIVA04G11850.1 126 FCKTLTASDTSTHGGFSVLRRHAEEClpqldmSQNPPC-QELVAKDLHGTEWHFRHIFRGQPRRHLLTTGWSVFVSSKRLVAGDAFIFL--RGE 216
                      99*****************************7556666.59************************************************..449 PP

                      EE..EEEEE- CS
               B3  89 efelvvkvfr 98 
                      ++el+v+v+r
  ONIVA04G11850.1 217 SGELRVGVRR 226
                      999*****97 PP
2Auxin_resp101.61.1e-33252337183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsd...ldpvrWpnSkWrsLk 83 
                      a+ha+st++ F+v+Y+Pr+s+seFvv+v+k+++a k+++svGmRfkm+fe+++++err+sGt++g+     ++ + W +S W+sLk
  ONIVA04G11850.1 252 ASHAISTGTLFSVFYKPRTSRSEFVVSVNKYLEAKKQNLSVGMRFKMRFEGDEAPERRFSGTIIGIGSvpaMSKSPWADSDWKSLK 337
                      789*************************************************************987522267889********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 694 aa     Download sequence    
MAAAMEMAAN PGGSGTCSDA LFRELWHACA GPLVTVPKRG ERVYYFPQGH MEQLEASTNQ  60
QLDQYLPMFN LPSKILCSVV NVELRAEADS DEVYAQIMLQ PEADQSELTS LDPELQDLEK  120
CTAHSFCKTL TASDTSTHGG FSVLRRHAEE CLPQLDMSQN PPCQELVAKD LHGTEWHFRH  180
IFRGQPRRHL LTTGWSVFVS SKRLVAGDAF IFLRGESGEL RVGVRRLMRQ VNNMPSSVIS  240
SHSMHLGVLA TASHAISTGT LFSVFYKPRT SRSEFVVSVN KYLEAKKQNL SVGMRFKMRF  300
EGDEAPERRF SGTIIGIGSV PAMSKSPWAD SDWKSLKVQW DEPSAIVRPD RVSPWELEPL  360
DASNPQPPQP PLRNKRARPP ASPSVVAELP PSFGLWKPPS EAAQTLSFSE PQRAREIFPS  420
IPASIFSASS HVEFNSKNEP SILSNQFYWS MRDSKTDSFS ASTNKARVER KQEPTTMGCR  480
LFGIEISSAV EEALPAATVS GVGYDQTVLS VDVDSDQISQ PSNGNKSNAP GTSSERSPLE  540
SQSRQVRSCT KVIMQGMAVG RAVDLTKLNG YGDLRSKLEE MFDIQGDLCP TLKRWQVVYT  600
DDEDDMMLVG DDPWDEFCSM VKRIYIYSYE EAKLLAPKSK LPVIGDTIKL SSMNSSHESV  660
DLDNHASGAR DSADWLQWRG LLPRVVIVAS CRSE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.40.0ARF family protein