PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA04G11180.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GRAS
Protein Properties Length: 504aa    MW: 52635 Da    PI: 8.7024
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA04G11180.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS237.17.8e-73864951374
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg..dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                      lv+lLl+++ a ++gd+++a a+L ++  +as +g  dp qR+aa+++  La rla    +l  a ++ +++    +e++ a+++f+++sP+++
  ONIVA04G11180.1  86 LVRLLLSAVAAGEAGDARAAAAALREVDRRASCRGggDPAQRVAACYAAVLAPRLAA---GLRPARSSPAAPAAARAEQFLAYTMFYQASPFYQ 176
                      6899**************************99998789******************9...44444444444444589999************** PP

             GRAS  93 fshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRpeg...................ppslRiTgvgspesgskeeleetgerL 165
                      f+h+taNqaI+ea+e+   +r+H++Dfd+s+G+QWp+L+q+L++ ++                    p slRiTg+g+    s++el+et+ rL
  ONIVA04G11180.1 177 FAHFTANQAIVEAFESGgrRRLHVVDFDVSYGFQWPSLIQSLSDAAAAatsssshddddnrggcgdgPVSLRITGFGA----SADELRETEARL 266
                      **************9876699*********************988744455677888889999999788*********....9*********** PP

             GRAS 166 akfAeel.gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe.....adhnse.. 251
                      ++fA+ + +++fef+  + ++ ++ + +  r++ + +++Vnlv+   +     ++      + +  ++sl+P +v ++e+      +    +  
  ONIVA04G11180.1 267 RRFAAGCpNLRFEFEG-ILNNGSNTRHDCTRIDDDATVVVNLVFPASSRE---AC----AATRMAYINSLNPSMVFLIEKHdggggL----Tgg 348
                      ***998769*******.6999***********************655553...22....234699**************97555431....133 PP

             GRAS 252 .........sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetle..........kWrerleeaGFkp 326
                               s+l rf+  l+y++a+fdsl++ lp++s er  +Er  lgrei ++va    ++r rh   +          +W++++  aG+  
  ONIVA04G11180.1 349 dntttgrsaSLLPRFAANLRYFAAVFDSLHECLPADSAERLAIERDHLGREIADAVASLDHQHRRRHGGGGgggdhaaaswNWKAAMAGAGLDG 442
                      455566777*************************************************9999999996533222222233389*********** PP

             GRAS 327 vplsekaakqaklllrkvk...sdgyrveeesgslv..lgWkdrpLvsvSaWr 374
                      v+ls+++++qaklll++ +   + g+rv e +g +   l W+d +L ++++Wr
  ONIVA04G11180.1 443 VKLSSRTVSQAKLLLKMKSgcgGGGFRVVEGDGGMAmsLAWRDMALATATVWR 495
                      ***************9977422455***9998877668**************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    
MNLKLSLAID GGGGGDAAAA VAKKSKVVGG GAVVVDGVGS SAICGGDRGS RVRDRMVKKA  60
EEFDHENGMA ATSSDGGGGG GGGMELVRLL LSAVAAGEAG DARAAAAALR EVDRRASCRG  120
GGDPAQRVAA CYAAVLAPRL AAGLRPARSS PAAPAAARAE QFLAYTMFYQ ASPFYQFAHF  180
TANQAIVEAF ESGGRRRLHV VDFDVSYGFQ WPSLIQSLSD AAAAATSSSS HDDDDNRGGC  240
GDGPVSLRIT GFGASADELR ETEARLRRFA AGCPNLRFEF EGILNNGSNT RHDCTRIDDD  300
ATVVVNLVFP ASSREACAAT RMAYINSLNP SMVFLIEKHD GGGGLTGGDN TTTGRSASLL  360
PRFAANLRYF AAVFDSLHEC LPADSAERLA IERDHLGREI ADAVASLDHQ HRRRHGGGGG  420
GGDHAAASWN WKAAMAGAGL DGVKLSSRTV SQAKLLLKMK SGCGGGGFRV VEGDGGMAMS  480
LAWRDMALAT ATVWRRRRRR RRCR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1495500RRRRRR
2495501RRRRRRR
3495502RRRRRRRR
4496501RRRRRR
5496502RRRRRRR
6496503RRRRRRRR
7497502RRRRRR
8497504RRRRRRRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.12e-27GRAS family protein