PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA04G09470.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | LBD | ||||||||
Protein Properties | Length: 89aa MW: 10422.5 Da PI: 4.44 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 46.8 | 8.4e-15 | 1 | 52 | 46 | 97 |
DUF260 46 lkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 +++lp +++ d++sslvyeA+ r+rdPvy +v+ i+ lq+q++ql+ +la ONIVA04G09470.1 1 MQELPVQQQGDTVSSLVYEANDRMRDPVYDCVRAISFLQNQVSQLQMQLAIG 52 68999*******************************************9875 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 89 aa Download sequence |
MQELPVQQQG DTVSSLVYEA NDRMRDPVYD CVRAISFLQN QVSQLQMQLA IGQGENLCIQ 60 MQHRDGNENE KNAREEEERE RREKREGNI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30130.1 | 9e-28 | LBD family protein |
Link Out ? help Back to Top | |
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Ensembl | ONIVA04G09470.1 |