PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA04G07960.2

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

bHLH

Protein Properties

Length: 383aa MW: 40039.2 Da PI: 5.1513

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA04G07960.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	21.3	4.8e-07	136	211	6	55
HHHHHHHHHHHHHHHHHHHCTSCC.C............................TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.as.........................kapskKlsKaeiLekAveYIksLq 55 Er+RR r+++++ eLr l+P+ + ++Ka+i Av Y+k+Lq ONIVA04G07960.2 136 IVSERKRRVRMKEKLYELRALVPNiTKvrtqcliarvgvamaappcaiantsLMIAWQMDKASIIADAVVYVKDLQ 211 568*******************666*****************9997667777***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence
MEHHHLLLQL SPPPPPPPLP AAHLMMSPSF FDAGVFADVG GDWMEDLMHL GELFGVGVGG 60 DDDDNGGVDG GVGGGDDRMQ EWQNNCEGAG SPDHQPSCGD GDGDGDGDVS PRDGELGDGD 120 GDNSATRKRR DRSKTIVSER KRRVRMKEKL YELRALVPNI TKVRTQCLIA RVGVAMAAPP 180 CAIANTSLMI AWQMDKASII ADAVVYVKDL QAHARKLKEE VAALEEGRPI RPPPPSAAAQ 240 RPQRQPRRVA AAAAQLARAA DAAAVTTAAA APHGARVAHV GAAQVGEGRF FVTVECEPAA 300 AAARGGGGGV AAPVCAAVES LSCFTVESST VGCSPDRVVA TLTLKVSEAE EDVSAISECT 360 VKLWVMAALL KEGFRPQPTV QIS

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence

MEHHHLLLQL SPPPPPPPLP AAHLMMSPSF FDAGVFADVG GDWMEDLMHL GELFGVGVGG  60
DDDDNGGVDG GVGGGDDRMQ EWQNNCEGAG SPDHQPSCGD GDGDGDGDVS PRDGELGDGD  120
GDNSATRKRR DRSKTIVSER KRRVRMKEKL YELRALVPNI TKVRTQCLIA RVGVAMAAPP  180
CAIANTSLMI AWQMDKASII ADAVVYVKDL QAHARKLKEE VAALEEGRPI RPPPPSAAAQ  240
RPQRQPRRVA AAAAQLARAA DAAAVTTAAA APHGARVAHV GAAQVGEGRF FVTVECEPAA  300
AAARGGGGGV AAPVCAAVES LSCFTVESST VGCSPDRVVA TLTLKVSEAE EDVSAISECT  360
VKLWVMAALL KEGFRPQPTV QIS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	127	143	RKRRDRSKTIVSERKRR
2	128	144	RKRRDRSKTIVSERKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28160.1	8e-21	bHLH family protein

Link Out ? help Back to Top
Ensembl	ONIVA04G07960.2