PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA04G06980.2

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

bHLH

Protein Properties

Length: 262aa MW: 28069.6 Da PI: 8.2454

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA04G06980.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.8	2.6e-10	90	137	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR+ri +++ L++l+P + +k Ka +L + ++Y++sLq ONIVA04G06980.2 90 SHSLAERVRRERISERMKLLQSLVPGC----NKITGKALMLDEIINYVQSLQ 137 8************************....999***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence
MNPTTAAAAD QPSKPSAAAA RKRKSSAKPK ASSSSLPTAT ATTNASPKRS KVAAGAGDDG 60 DGDADAAEEK PEPAKDYIHV RARRGQATDS HSLAERVRRE RISERMKLLQ SLVPGCNKIT 120 GKALMLDEII NYVQSLQRQV EFLSMKLATM NPQLDFDSHY MPSKDMSHMP VPAYPSGDPT 180 TTTAFSYTGS PATADPFTVY NCWELDLHTA MQMGATPGLS QDVPIATMAP SPSPLPHHPP 240 LHGFYGGQQQ QGTTVNHMKA EP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	1e-50	bHLH family protein

Link Out ? help Back to Top
Ensembl	ONIVA04G06980.2