PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA04G05310.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

MIKC_MADS

Protein Properties

Length: 255aa MW: 29519.2 Da PI: 8.864

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA04G05310.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	83	1.9e-26	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 kri+n++nrqvtfskRr g++KKA EL +LCda+v +i+fs tg+ly++ss ONIVA04G05310.1 9 KRIDNTTNRQVTFSKRRGGLMKKARELAILCDADVGLIVFSCTGRLYDFSS 59 79***********************************************96 PP
2	K-box	48.7	3.2e-17	146	213	32	99
K-box 32 qreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 +++R+llGe++++ ++++Lq L++q+e sl +iR+kK l+ ++ +el+kk + ++++n +L+kkl+ ONIVA04G05310.1 146 VSNKRQLLGEEISNFTVRDLQLLQNQVEMSLHSIRNKKGSLVQKENSELRKKFNIAHQRNIELHKKLN 213 5799*************************************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence
MGRGKIAIKR IDNTTNRQVT FSKRRGGLMK KARELAILCD ADVGLIVFSC TGRLYDFSSS 60 SMKSIIERYQ EAGEEHCRLL NPMSEAKFWQ REVTTLRQQV QNLHHNNSFY LSANYLNENS 120 AYYFIRINQY EGENEIFFKA HVEIHVSNKR QLLGEEISNF TVRDLQLLQN QVEMSLHSIR 180 NKKGSLVQKE NSELRKKFNI AHQRNIELHK KLNSGESTSS EQVTRSSKDP GESSTPRDSR 240 VCIDLELSQK EVEDE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57230.1	2e-63	MIKC_MADS family protein

Link Out ? help Back to Top
Ensembl	ONIVA04G05310.1