PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA04G01780.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 345aa    MW: 35296.9 Da    PI: 5.8883
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA04G01780.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.0008244266123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++Cg  F +   L  H+r+H
  ONIVA04G01780.1 244 HECSICGAEFASGQALGGHMRRH 266
                      78********************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    
MGVQEEAALA AAVVKGKRSK RQRAHAAAAV VVPIAASATA EEEESMESSL SLSGGAAAEG  60
SSTTSPLLTT TTTARGDEAV SGCVTEEEED MALCLMLLAS GGHGERAPDA EAVAAKEAKF  120
RSRRPADGAG AGEFVYECKT CSKCFPSFQA LGGHRTSHKK PRLVAPPATT EPAADDKVKP  180
AIPETAAAAA EEKPPKPSPP RPPASRPIAT DPTVLAIPVI PKQEVLDANS AAAIASVSKQ  240
PRVHECSICG AEFASGQALG GHMRRHRPLI PASASSAVVS VLDAVDAPRQ KEKSLLELDL  300
NMPAPCDDAA AETTTSSAAT SPAFAFAVSD RSPLLVPAAL VGCHY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.15e-27C2H2 family protein