PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA04G00640.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

C3H

Protein Properties

Length: 1130aa MW: 123014 Da PI: 6.5716

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA04G00640.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.4	3.8e-06	104	116	14	26
--TTTTT-SS-SS CS zf-CCCH 14 tCkyGdrCkFaHg 26 CkyGd+C+F+H+ ONIVA04G00640.1 104 SCKYGDSCRFSHD 116 7***********6 PP

Sequence ? help Back to Top
Protein Sequence Length: 1130 aa Download sequence
MAAAAAAAAA APPADPPDSS PAASSPPRPS PEELVARAVA PVKPAFLRPP PVRDAPKDEG 60 KANDGGAVVA EKKSKRQLKR ERKQEQKSSS HLCIEVGKSG NVSSCKYGDS CRFSHDIDAY 120 LAQKPADLEG TCPFTNLDQL CPYGLTCRFL GTHKDIHAAS GNLSEKHEIN ALNKDIQKLL 180 WKNKYKFPKA SAQIKLLGLK EVIKSKPDAA NDDKKVNHDN LDGNDDENKE PLCNPPVNAE 240 CDSTLCEELD RSEGEPLIDN SIPCVEPRPT KKSKVESDEI DKHGAGTLNT NTESEDPNLS 300 NGLEPSNNAS SCRTDLITTP HLREKKIIDF REKLYLAPLT TVGNLPFRRL CKTLGADITC 360 GEMAMCTNLL QGQASEWALL RRHSSEDLFG VQICGAYPDT VARTVELVDN ECSIDFIDIN 420 MGCPIDIVVN KGAGSSLLTK PMRIKSIVQA ASTVTEKPLT VKVRTAFFEG RNRADSIVSD 480 IYDWGASAIT VHGRSRQQRY SKLADWDYIY QCAQKAPDQL HVVGNGDVFS FTDWNKHVSG 540 CSKISTCMIA RGALIKPWIF TEVKEQRHWD ITSGERFNIL KDFVSFGLEH WGSDSKGVET 600 TRYFLLEWLS YTCRYIPVGL LDVIPQRLNW RPPSYCGRDD LETLMISDSA ADWIRISEML 660 LGKVPEGHTV PIFCCFANWA SICRRRAAQA QPLCRLNKLS RGGGVEDQRF VLPPPPPPSS 720 QQLPLHGLTF AIKDIFDIAG RVTGFGNPDW ARTHAPAAAT SPVVLAALAA GATSLGTTIM 780 DEMAYSINGE NTHYGTPTNP CAPGRVPGGS SSGSAVAVAA NLVDFSLGTD TGGSVRVPAA 840 YCGIFGLRPS HGLVSAENVI PMAQMFDTVG WFSRDLSTLS RVTKVLLPLP DDIVKQPTQV 900 TIPMDCFQIL GSLNDRTYQI INASVAKRFD SQIIDNRNLG DFISDNVPSI GKFITDFSES 960 ELPSVPALSV ISHVMRGLQR SQFKANHAEW VNTVKPNLGP GLRERILEAI ASGDNESLED 1020 FQAIRAEFKS ALAALLKDHG ILAIPTVPGP PPKVGMEAAP LENFRARAFS LLSIAGLSGF 1080 CQVSIPLGMR NGLPVSVSLV ARHGADHFLL NVVEELYQTL IDEATKTWSS

Sequence ? help Back to Top

Protein Sequence Length: 1130 aa Download sequence

MAAAAAAAAA APPADPPDSS PAASSPPRPS PEELVARAVA PVKPAFLRPP PVRDAPKDEG  60
KANDGGAVVA EKKSKRQLKR ERKQEQKSSS HLCIEVGKSG NVSSCKYGDS CRFSHDIDAY  120
LAQKPADLEG TCPFTNLDQL CPYGLTCRFL GTHKDIHAAS GNLSEKHEIN ALNKDIQKLL  180
WKNKYKFPKA SAQIKLLGLK EVIKSKPDAA NDDKKVNHDN LDGNDDENKE PLCNPPVNAE  240
CDSTLCEELD RSEGEPLIDN SIPCVEPRPT KKSKVESDEI DKHGAGTLNT NTESEDPNLS  300
NGLEPSNNAS SCRTDLITTP HLREKKIIDF REKLYLAPLT TVGNLPFRRL CKTLGADITC  360
GEMAMCTNLL QGQASEWALL RRHSSEDLFG VQICGAYPDT VARTVELVDN ECSIDFIDIN  420
MGCPIDIVVN KGAGSSLLTK PMRIKSIVQA ASTVTEKPLT VKVRTAFFEG RNRADSIVSD  480
IYDWGASAIT VHGRSRQQRY SKLADWDYIY QCAQKAPDQL HVVGNGDVFS FTDWNKHVSG  540
CSKISTCMIA RGALIKPWIF TEVKEQRHWD ITSGERFNIL KDFVSFGLEH WGSDSKGVET  600
TRYFLLEWLS YTCRYIPVGL LDVIPQRLNW RPPSYCGRDD LETLMISDSA ADWIRISEML  660
LGKVPEGHTV PIFCCFANWA SICRRRAAQA QPLCRLNKLS RGGGVEDQRF VLPPPPPPSS  720
QQLPLHGLTF AIKDIFDIAG RVTGFGNPDW ARTHAPAAAT SPVVLAALAA GATSLGTTIM  780
DEMAYSINGE NTHYGTPTNP CAPGRVPGGS SSGSAVAVAA NLVDFSLGTD TGGSVRVPAA  840
YCGIFGLRPS HGLVSAENVI PMAQMFDTVG WFSRDLSTLS RVTKVLLPLP DDIVKQPTQV  900
TIPMDCFQIL GSLNDRTYQI INASVAKRFD SQIIDNRNLG DFISDNVPSI GKFITDFSES  960
ELPSVPALSV ISHVMRGLQR SQFKANHAEW VNTVKPNLGP GLRERILEAI ASGDNESLED  1020
FQAIRAEFKS ALAALLKDHG ILAIPTVPGP PPKVGMEAAP LENFRARAFS LLSIAGLSGF  1080
CQVSIPLGMR NGLPVSVSLV ARHGADHFLL NVVEELYQTL IDEATKTWSS

Link Out ? help Back to Top
Ensembl	ONIVA04G00640.1