PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA04G00640.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C3H
Protein Properties Length: 1130aa    MW: 123014 Da    PI: 6.5716
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA04G00640.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.43.8e-061041161426
                      --TTTTT-SS-SS CS
          zf-CCCH  14 tCkyGdrCkFaHg 26 
                       CkyGd+C+F+H+
  ONIVA04G00640.1 104 SCKYGDSCRFSHD 116
                      7***********6 PP

Sequence ? help Back to Top
Protein Sequence    Length: 1130 aa     Download sequence    
MAAAAAAAAA APPADPPDSS PAASSPPRPS PEELVARAVA PVKPAFLRPP PVRDAPKDEG  60
KANDGGAVVA EKKSKRQLKR ERKQEQKSSS HLCIEVGKSG NVSSCKYGDS CRFSHDIDAY  120
LAQKPADLEG TCPFTNLDQL CPYGLTCRFL GTHKDIHAAS GNLSEKHEIN ALNKDIQKLL  180
WKNKYKFPKA SAQIKLLGLK EVIKSKPDAA NDDKKVNHDN LDGNDDENKE PLCNPPVNAE  240
CDSTLCEELD RSEGEPLIDN SIPCVEPRPT KKSKVESDEI DKHGAGTLNT NTESEDPNLS  300
NGLEPSNNAS SCRTDLITTP HLREKKIIDF REKLYLAPLT TVGNLPFRRL CKTLGADITC  360
GEMAMCTNLL QGQASEWALL RRHSSEDLFG VQICGAYPDT VARTVELVDN ECSIDFIDIN  420
MGCPIDIVVN KGAGSSLLTK PMRIKSIVQA ASTVTEKPLT VKVRTAFFEG RNRADSIVSD  480
IYDWGASAIT VHGRSRQQRY SKLADWDYIY QCAQKAPDQL HVVGNGDVFS FTDWNKHVSG  540
CSKISTCMIA RGALIKPWIF TEVKEQRHWD ITSGERFNIL KDFVSFGLEH WGSDSKGVET  600
TRYFLLEWLS YTCRYIPVGL LDVIPQRLNW RPPSYCGRDD LETLMISDSA ADWIRISEML  660
LGKVPEGHTV PIFCCFANWA SICRRRAAQA QPLCRLNKLS RGGGVEDQRF VLPPPPPPSS  720
QQLPLHGLTF AIKDIFDIAG RVTGFGNPDW ARTHAPAAAT SPVVLAALAA GATSLGTTIM  780
DEMAYSINGE NTHYGTPTNP CAPGRVPGGS SSGSAVAVAA NLVDFSLGTD TGGSVRVPAA  840
YCGIFGLRPS HGLVSAENVI PMAQMFDTVG WFSRDLSTLS RVTKVLLPLP DDIVKQPTQV  900
TIPMDCFQIL GSLNDRTYQI INASVAKRFD SQIIDNRNLG DFISDNVPSI GKFITDFSES  960
ELPSVPALSV ISHVMRGLQR SQFKANHAEW VNTVKPNLGP GLRERILEAI ASGDNESLED  1020
FQAIRAEFKS ALAALLKDHG ILAIPTVPGP PPKVGMEAAP LENFRARAFS LLSIAGLSGF  1080
CQVSIPLGMR NGLPVSVSLV ARHGADHFLL NVVEELYQTL IDEATKTWSS