PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA04G00200.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C3H
Protein Properties Length: 831aa    MW: 90158.3 Da    PI: 5.0236
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA04G00200.2genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.41e-075283127
                     --S---SGGGGTS.....--TTTTT-SS-SSS CS
          zf-CCCH  1 yktelCrffartG.....tCkyGdrCkFaHgp 27
                     +kt+lC+ff+r        C++Gd+C++aH++
  ONIVA04G00200.2 52 WKTSLCSFFRRRAassadGCSHGDSCRYAHSE 83
                     8**********88*****************95 PP

Sequence ? help Back to Top
Protein Sequence    Length: 831 aa     Download sequence    
MEMEMEDNKA PSPPSPMESD VAGEKRKRED DASSSAVLAA ANNTGGAQHP MWKTSLCSFF  60
RRRAASSADG CSHGDSCRYA HSEEELRPRP DGTWDPTSDR AKKLRKVAAD EVEEEVVTID  120
DKALDKCLGI SYATAKKKKG MTVGFVTFEN IEQLKNAIEV LTENQSGGKE IKIADANRRS  180
HQKLHTEKPV SDNGVTTENG TSVDVPPGET SAPEAAISNK KSVRDAVTPL AHMSYNDQLE  240
HKKNSVAQIL KRLTRNARKA CPTGIPLPDW VFKSKEIGGL PCKLEGILES PVINGYRNKC  300
EFSVGFSLEG KKTVGFMLGN FREGVTAVEE PVDCPNVSEI SCKYALMFQD FLQSSSLPVW  360
NRVDNCGFWR QFTVREGRCR AQAVAQNAET QISEVMLIVQ VCSTGVDDAV MKDEFDKLTV  420
ALQQGAATCS PPLPLTTIVV QDHKGISNAA PADCPLIPLL VPKVDQSEGT VDKTRIHDHI  480
GNLWFSISPT AFFQVNTLAA ERLYTLAGDW ANLNSGTLLF DVCCGTGTIG LTLAHRVGMV  540
VGIEMNESAV SDAERNALIN GVSNCRFVCG KAEDVMGSLL TEYLGSPQQD IPVSEGAVSG  600
TVKDEEVIDS SKNSGENLDS SMQKNDNGKS QQLGDAPADS SSSAIDEIKG NSNDRVGNGL  660
EGSHDEYNEV AGEDIHGEAS LINESVDLKV SDCLEDRKTS DDGSSISNND VTAATACQFE  720
DIVAIVDPPR VGLHPTVIKA LRTHPRIRRL VYISCNPDSL VANAIELCTP SSEKQEKNKG  780
NRGWRTMSSA GLARQRTKSM PNSEPFVPKR AMAVDLFPHT SHCEMVMLFE R
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1102139KKLRKVAADEVEEEVVTIDDKALDKCLGISYATAKKKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28450.20.0C3H family protein