PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA04G00200.2

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

C3H

Protein Properties

Length: 831aa MW: 90158.3 Da PI: 5.0236

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA04G00200.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.4	1e-07	52	83	1	27
--S---SGGGGTS.....--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartG.....tCkyGdrCkFaHgp 27 +kt+lC+ff+r C++Gd+C++aH++ ONIVA04G00200.2 52 WKTSLCSFFRRRAassadGCSHGDSCRYAHSE 83 8********88***************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 831 aa Download sequence
MEMEMEDNKA PSPPSPMESD VAGEKRKRED DASSSAVLAA ANNTGGAQHP MWKTSLCSFF 60 RRRAASSADG CSHGDSCRYA HSEEELRPRP DGTWDPTSDR AKKLRKVAAD EVEEEVVTID 120 DKALDKCLGI SYATAKKKKG MTVGFVTFEN IEQLKNAIEV LTENQSGGKE IKIADANRRS 180 HQKLHTEKPV SDNGVTTENG TSVDVPPGET SAPEAAISNK KSVRDAVTPL AHMSYNDQLE 240 HKKNSVAQIL KRLTRNARKA CPTGIPLPDW VFKSKEIGGL PCKLEGILES PVINGYRNKC 300 EFSVGFSLEG KKTVGFMLGN FREGVTAVEE PVDCPNVSEI SCKYALMFQD FLQSSSLPVW 360 NRVDNCGFWR QFTVREGRCR AQAVAQNAET QISEVMLIVQ VCSTGVDDAV MKDEFDKLTV 420 ALQQGAATCS PPLPLTTIVV QDHKGISNAA PADCPLIPLL VPKVDQSEGT VDKTRIHDHI 480 GNLWFSISPT AFFQVNTLAA ERLYTLAGDW ANLNSGTLLF DVCCGTGTIG LTLAHRVGMV 540 VGIEMNESAV SDAERNALIN GVSNCRFVCG KAEDVMGSLL TEYLGSPQQD IPVSEGAVSG 600 TVKDEEVIDS SKNSGENLDS SMQKNDNGKS QQLGDAPADS SSSAIDEIKG NSNDRVGNGL 660 EGSHDEYNEV AGEDIHGEAS LINESVDLKV SDCLEDRKTS DDGSSISNND VTAATACQFE 720 DIVAIVDPPR VGLHPTVIKA LRTHPRIRRL VYISCNPDSL VANAIELCTP SSEKQEKNKG 780 NRGWRTMSSA GLARQRTKSM PNSEPFVPKR AMAVDLFPHT SHCEMVMLFE R

Sequence ? help Back to Top

Protein Sequence Length: 831 aa Download sequence

MEMEMEDNKA PSPPSPMESD VAGEKRKRED DASSSAVLAA ANNTGGAQHP MWKTSLCSFF  60
RRRAASSADG CSHGDSCRYA HSEEELRPRP DGTWDPTSDR AKKLRKVAAD EVEEEVVTID  120
DKALDKCLGI SYATAKKKKG MTVGFVTFEN IEQLKNAIEV LTENQSGGKE IKIADANRRS  180
HQKLHTEKPV SDNGVTTENG TSVDVPPGET SAPEAAISNK KSVRDAVTPL AHMSYNDQLE  240
HKKNSVAQIL KRLTRNARKA CPTGIPLPDW VFKSKEIGGL PCKLEGILES PVINGYRNKC  300
EFSVGFSLEG KKTVGFMLGN FREGVTAVEE PVDCPNVSEI SCKYALMFQD FLQSSSLPVW  360
NRVDNCGFWR QFTVREGRCR AQAVAQNAET QISEVMLIVQ VCSTGVDDAV MKDEFDKLTV  420
ALQQGAATCS PPLPLTTIVV QDHKGISNAA PADCPLIPLL VPKVDQSEGT VDKTRIHDHI  480
GNLWFSISPT AFFQVNTLAA ERLYTLAGDW ANLNSGTLLF DVCCGTGTIG LTLAHRVGMV  540
VGIEMNESAV SDAERNALIN GVSNCRFVCG KAEDVMGSLL TEYLGSPQQD IPVSEGAVSG  600
TVKDEEVIDS SKNSGENLDS SMQKNDNGKS QQLGDAPADS SSSAIDEIKG NSNDRVGNGL  660
EGSHDEYNEV AGEDIHGEAS LINESVDLKV SDCLEDRKTS DDGSSISNND VTAATACQFE  720
DIVAIVDPPR VGLHPTVIKA LRTHPRIRRL VYISCNPDSL VANAIELCTP SSEKQEKNKG  780
NRGWRTMSSA GLARQRTKSM PNSEPFVPKR AMAVDLFPHT SHCEMVMLFE R

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	102	139	KKLRKVAADEVEEEVVTIDDKALDKCLGISYATAKKKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28450.2	0.0	C3H family protein

Link Out ? help Back to Top
Ensembl	ONIVA04G00200.2