PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA04G00200.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C3H
Protein Properties Length: 865aa    MW: 93965.7 Da    PI: 5.174
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA04G00200.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.31.1e-075283127
                     --S---SGGGGTS.....--TTTTT-SS-SSS CS
          zf-CCCH  1 yktelCrffartG.....tCkyGdrCkFaHgp 27
                     +kt+lC+ff+r        C++Gd+C++aH++
  ONIVA04G00200.1 52 WKTSLCSFFRRRAassadGCSHGDSCRYAHSE 83
                     8**********88*****************95 PP

Sequence ? help Back to Top
Protein Sequence    Length: 865 aa     Download sequence    
MEMEMEDNKA PSPPSPMESD VAGEKRKRED DASSSAVLAA ANNTGGAQHP MWKTSLCSFF  60
RRRAASSADG CSHGDSCRYA HSEEELRPRP DGTWDPTSDR AKKLRKVAAD EVEEEVVTID  120
DKALDKCLVG LPRGWANDRL KTFLQDKART NYSSILPPAL LLGISYATAK KKKGMTVGFV  180
TFENIEQLKN AIEVLTENQS GGKEIKIADA NRRSHQKLHT EKPVSDNGVT TENGTSVDVP  240
PGETSAPEAA ISNKKSVRDA VTPLAHMSYN DQLEHKKNSV AQILKRLTRN ARKACPTGIP  300
LPDWVFKSKE IGGLPCKLEG ILESPVINGY RNKCEFSVGF SLEGKKTVGF MLGNFREGVT  360
AVEEPVDCPN VSEISCKYAL MFQDFLQSSS LPVWNRVDNC GFWRQFTVRE GRCRAQAVAQ  420
NAETQISEVM LIVQVCSTGV DDAVMKDEFD KLTVALQQGA ATCSPPLPLT TIVVQDHKGI  480
SNAAPADCPL IPLLVPKVDQ SEGTVDKTRI HDHIGNLWFS ISPTAFFQVN TLAAERLYTL  540
AGDWANLNSG TLLFDVCCGT GTIGLTLAHR VGMVVGIEMN ESAVSDAERN ALINGVSNCR  600
FVCGKAEDVM GSLLTEYLGS PQQDIPVSEG AVSGTVKDEE VIDSSKNSGE NLDSSMQKND  660
NGKSQQLGDA PADSSSSAID EIKGNSNDRV GNGLEGSHDE YNEVAGEDIH GEASLINESV  720
DLKVSDCLED RKTSDDGSSI SNNDVTAATA CQFEDIVAIV DPPRVGLHPT VIKALRTHPR  780
IRRLVYISCN PDSLVANAIE LCTPSSEKQE KNKGNRGWRT MSSAGLARQR TKSMPNSEPF  840
VPKRAMAVDL FPHTSHCEMV MLFER
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28450.20.0C3H family protein