PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA04G00200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | C3H | ||||||||
Protein Properties | Length: 865aa MW: 93965.7 Da PI: 5.174 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23.3 | 1.1e-07 | 52 | 83 | 1 | 27 |
--S---SGGGGTS.....--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartG.....tCkyGdrCkFaHgp 27 +kt+lC+ff+r C++Gd+C++aH++ ONIVA04G00200.1 52 WKTSLCSFFRRRAassadGCSHGDSCRYAHSE 83 8**********88*****************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 865 aa Download sequence |
MEMEMEDNKA PSPPSPMESD VAGEKRKRED DASSSAVLAA ANNTGGAQHP MWKTSLCSFF 60 RRRAASSADG CSHGDSCRYA HSEEELRPRP DGTWDPTSDR AKKLRKVAAD EVEEEVVTID 120 DKALDKCLVG LPRGWANDRL KTFLQDKART NYSSILPPAL LLGISYATAK KKKGMTVGFV 180 TFENIEQLKN AIEVLTENQS GGKEIKIADA NRRSHQKLHT EKPVSDNGVT TENGTSVDVP 240 PGETSAPEAA ISNKKSVRDA VTPLAHMSYN DQLEHKKNSV AQILKRLTRN ARKACPTGIP 300 LPDWVFKSKE IGGLPCKLEG ILESPVINGY RNKCEFSVGF SLEGKKTVGF MLGNFREGVT 360 AVEEPVDCPN VSEISCKYAL MFQDFLQSSS LPVWNRVDNC GFWRQFTVRE GRCRAQAVAQ 420 NAETQISEVM LIVQVCSTGV DDAVMKDEFD KLTVALQQGA ATCSPPLPLT TIVVQDHKGI 480 SNAAPADCPL IPLLVPKVDQ SEGTVDKTRI HDHIGNLWFS ISPTAFFQVN TLAAERLYTL 540 AGDWANLNSG TLLFDVCCGT GTIGLTLAHR VGMVVGIEMN ESAVSDAERN ALINGVSNCR 600 FVCGKAEDVM GSLLTEYLGS PQQDIPVSEG AVSGTVKDEE VIDSSKNSGE NLDSSMQKND 660 NGKSQQLGDA PADSSSSAID EIKGNSNDRV GNGLEGSHDE YNEVAGEDIH GEASLINESV 720 DLKVSDCLED RKTSDDGSSI SNNDVTAATA CQFEDIVAIV DPPRVGLHPT VIKALRTHPR 780 IRRLVYISCN PDSLVANAIE LCTPSSEKQE KNKGNRGWRT MSSAGLARQR TKSMPNSEPF 840 VPKRAMAVDL FPHTSHCEMV MLFER |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28450.2 | 0.0 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | ONIVA04G00200.1 |