PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA03G42150.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

C2H2

Protein Properties

Length: 385aa MW: 41924.8 Da PI: 6.5017

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA03G42150.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	21.4	6.8e-07	165	186	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C+ Cgk F+r nL+ H+r H ONIVA03G42150.1 165 FCGVCGKGFKRDANLRMHMRGH 186 6*******************98 PP
2	zf-C2H2	11.5	0.00092	289	303	6	20
TTEEESSHHHHHHHH CS zf-C2H2 6 CgksFsrksnLkrHi 20 Cg+sFsrk+ L H ONIVA03G42150.1 289 CGTSFSRKDKLFAHV 303 **************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence
MMMSSSADHF SNNNNNQAMY LEQDEDFSQM IMELCDFDAS STTQARHGGE AAAAAAGEAR 60 AVLTYLTFLE QKIGHLRGII SSTPNPPPQI VAAELSCIVV QLVSISKNLA AARRGGDDAD 120 ADAKHDGSSD ADEGADGDGE RAPPRGSYEV VQIEKEEILA PHVHFCGVCG KGFKRDANLR 180 MHMRGHGEEY KSAAALAKPG GSPSRSPAAA DAAARRRFYS CPYVGCKRNR EHKSFQPLKT 240 PTCVKNHYRR SHCDKSFTCR RCNVKRFSVV ADLRTHEKHC GRDRWVCSCG TSFSRKDKLF 300 AHVAIFDGHS PALPPEDYDD DAASGQLPHA AGEAVGRTVD TNRFFSDGLM IKGSMDDERG 360 SLSPMGLDYC EFDGIDLFAA AAFDF

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence

MMMSSSADHF SNNNNNQAMY LEQDEDFSQM IMELCDFDAS STTQARHGGE AAAAAAGEAR  60
AVLTYLTFLE QKIGHLRGII SSTPNPPPQI VAAELSCIVV QLVSISKNLA AARRGGDDAD  120
ADAKHDGSSD ADEGADGDGE RAPPRGSYEV VQIEKEEILA PHVHFCGVCG KGFKRDANLR  180
MHMRGHGEEY KSAAALAKPG GSPSRSPAAA DAAARRRFYS CPYVGCKRNR EHKSFQPLKT  240
PTCVKNHYRR SHCDKSFTCR RCNVKRFSVV ADLRTHEKHC GRDRWVCSCG TSFSRKDKLF  300
AHVAIFDGHS PALPPEDYDD DAASGQLPHA AGEAVGRTVD TNRFFSDGLM IKGSMDDERG  360
SLSPMGLDYC EFDGIDLFAA AAFDF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.3	2e-94	C2H2 family protein

Link Out ? help Back to Top
Ensembl	ONIVA03G42150.1