PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA03G40100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bHLH | ||||||||
Protein Properties | Length: 260aa MW: 27098.8 Da PI: 6.161 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 15.9 | 2.3e-05 | 68 | 91 | 3 | 26 |
HHHHHHHHHHHHHHHHHHHHHHCT CS HLH 3 rahnerErrRRdriNsafeeLrel 26 r+h e+E+rRR+ri+s +++Lr + ONIVA03G40100.1 68 RNHREAEKRRRERIKSHLDRLRAI 91 78*******************975 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence |
MFPVEVAAAA AAAGRMQGEA VVPMMLPPFF MDSGIWPAAA GVVDVAASAE EEAAAAAAAQ 60 DRALAASRNH REAEKRRRER IKSHLDRLRA IDKASLLAKA VERVRDLKQR MAGIGEAAPA 120 HLFPTEHDEI VVLASGGGGV GGAGGAAAVF EASVCCDDRS DLLPELIETL RALRLRTLRA 180 EMATLGGRVR NVLVLARDAG GAGEGGDGDD DRAGYSAVSN DGGDFLKEAL RALVERPGAA 240 AGDRPKRRRV VSDMNMQAAA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 246 | 250 | KRRRV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41130.1 | 2e-15 | bHLH family protein |
Link Out ? help Back to Top | |
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Ensembl | ONIVA03G40100.1 |