PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA03G38180.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

LBD

Protein Properties

Length: 809aa MW: 87420 Da PI: 6.4796

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA03G38180.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	38.8	2.7e-12	705	759	47	101
DUF260 47 kalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101 ++lp +er +a++s++ eA r++dPvyG++gvi++lq q++ ++ ela +++++ ONIVA03G38180.1 705 EQLPVQERGRAADSMAAEAYRRVQDPVYGCAGVINRLQDQIRAAQCELAWTHAQI 759 688999********************************************99885 PP

Sequence ? help Back to Top
Protein Sequence Length: 809 aa Download sequence
MLSQPAAALA RLPPASVRVL VGFGAALLVS LVVLHRRPAA RGAAGGGGPA EYDPAARFLA 60 LSEGANATIA ADLRALTAGP HLAGTGAAAG AAARVLSGFR AAGLRTLTRE YTPLLSYPGH 120 ASLALLRADR TLLAHLSLDE PADVGRRLVR PYHAYAPSGG AVAEAVFVNL GREEDYLTLE 180 RLGVSVRGRV AVAIRGGGYR GGVVRRAAER SAAAVLIAGH ADGGVERGTV ILGGPGDPLT 240 PGWAATAGAE RLDFDHEDVK RRFPAIPSMP VSGKTASAII RTLGGPALPA DWQTGVGLPV 300 DVGGVGPGPT LVNFTYQEDR KMGMIQDIFA IIKGYEEPDR YVILGNHRDA WTYGAVDPNS 360 GTSALLDIAR RLGIMLQSGW TPRRTIILCS WDAEEFGMFS KISFICVPFI SFLHFEGSFF 420 QIGSTEWVEE NLEDLQSKAV AYLNVDCAVQ GIGLFAGSTP QLDNLLVDVT RQVKDPDVEG 480 KTVHDTWNKM TGGINIERLA RTDSDFAPFL HHAGIPCMDL YYGKEFPGYH TALDSYHWME 540 KHGDPLFLRH VAIVEIWGLL ALRLADDPVL PFDYQTYASQ LQEHANAFSS MMENSKWVHL 600 LNRSIEDLSD AGLEFLKEAK KLQDQNISDG YSLMRRRLLN DRLLLAERSF LQADGLQGRG 660 WFKHLMYSPP EDYESKLSFF PGVADAISRS SNRSAKEQQA AVRHEQLPVQ ERGRAADSMA 720 AEAYRRVQDP VYGCAGVINR LQDQIRAAQC ELAWTHAQIA MHSAAAAHAR TTLPPGQRDG 780 GGGGAPSTQQ ATTSAAWQLE DFASEFSFP

Sequence ? help Back to Top

Protein Sequence Length: 809 aa Download sequence

MLSQPAAALA RLPPASVRVL VGFGAALLVS LVVLHRRPAA RGAAGGGGPA EYDPAARFLA  60
LSEGANATIA ADLRALTAGP HLAGTGAAAG AAARVLSGFR AAGLRTLTRE YTPLLSYPGH  120
ASLALLRADR TLLAHLSLDE PADVGRRLVR PYHAYAPSGG AVAEAVFVNL GREEDYLTLE  180
RLGVSVRGRV AVAIRGGGYR GGVVRRAAER SAAAVLIAGH ADGGVERGTV ILGGPGDPLT  240
PGWAATAGAE RLDFDHEDVK RRFPAIPSMP VSGKTASAII RTLGGPALPA DWQTGVGLPV  300
DVGGVGPGPT LVNFTYQEDR KMGMIQDIFA IIKGYEEPDR YVILGNHRDA WTYGAVDPNS  360
GTSALLDIAR RLGIMLQSGW TPRRTIILCS WDAEEFGMFS KISFICVPFI SFLHFEGSFF  420
QIGSTEWVEE NLEDLQSKAV AYLNVDCAVQ GIGLFAGSTP QLDNLLVDVT RQVKDPDVEG  480
KTVHDTWNKM TGGINIERLA RTDSDFAPFL HHAGIPCMDL YYGKEFPGYH TALDSYHWME  540
KHGDPLFLRH VAIVEIWGLL ALRLADDPVL PFDYQTYASQ LQEHANAFSS MMENSKWVHL  600
LNRSIEDLSD AGLEFLKEAK KLQDQNISDG YSLMRRRLLN DRLLLAERSF LQADGLQGRG  660
WFKHLMYSPP EDYESKLSFF PGVADAISRS SNRSAKEQQA AVRHEQLPVQ ERGRAADSMA  720
AEAYRRVQDP VYGCAGVINR LQDQIRAAQC ELAWTHAQIA MHSAAAAHAR TTLPPGQRDG  780
GGGGAPSTQQ ATTSAAWQLE DFASEFSFP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	6e-11	LBD family protein

Link Out ? help Back to Top
Ensembl	ONIVA03G38180.1