PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA03G32910.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

CO-like

Protein Properties

Length: 421aa MW: 45833.6 Da PI: 6.655

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA03G32910.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	21.7	4.3e-07	17	60	3	39
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg.......Htv 39 +r C+ + + +++++C ++ +lC+ C + H+ H+v ONIVA03G32910.1 17 ARACDGCMRRRARWHCPADDAFLCQACDASVHSAnplarrhHRV 60 578*****************************668888886655 PP
2	CCT	66.2	9.3e-23	338	381	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F KkirYe+RK +Ae+RpR+KGrFvk+a ONIVA03G32910.1 338 REARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRA 381 9*****************************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 421 aa Download sequence
MASAAAATGA ALGARTARAC DGCMRRRARW HCPADDAFLC QACDASVHSA NPLARRHHRV 60 RLPSASSSPA SSPRSAAAPR AGSDDPDAPA WLHGLKRRPR TPRTKPGGGG KHDASAATVA 120 AAAASAVPDL EAEESGIVGD TDHDVGEEDD EDLLYRVPVF DPMLAELYNP VAADDEEQQI 180 EQKPAARVMP FSEPSPEFAS GSVEADGLSG FDVPDMELAS FAADMESLLM GVDEGFDDLG 240 FLDDEKPHVK LDLDMDMDFA SISPAPAPER EERKRKRPEM ILKLDYEGVI DSWARDGASP 300 WFHGERPRFD PSESWPDFPA GSRGGLGAAV TAVTGGEREA RVSRYREKRR TRLFAKKIRY 360 EVRKLNAEKR PRMKGRFVKR AAALPPLPLP RHQHPPPPPP RALPPVPMML APRGAHGRYR 420 F

Sequence ? help Back to Top

Protein Sequence Length: 421 aa Download sequence

MASAAAATGA ALGARTARAC DGCMRRRARW HCPADDAFLC QACDASVHSA NPLARRHHRV  60
RLPSASSSPA SSPRSAAAPR AGSDDPDAPA WLHGLKRRPR TPRTKPGGGG KHDASAATVA  120
AAAASAVPDL EAEESGIVGD TDHDVGEEDD EDLLYRVPVF DPMLAELYNP VAADDEEQQI  180
EQKPAARVMP FSEPSPEFAS GSVEADGLSG FDVPDMELAS FAADMESLLM GVDEGFDDLG  240
FLDDEKPHVK LDLDMDMDFA SISPAPAPER EERKRKRPEM ILKLDYEGVI DSWARDGASP  300
WFHGERPRFD PSESWPDFPA GSRGGLGAAV TAVTGGEREA RVSRYREKRR TRLFAKKIRY  360
EVRKLNAEKR PRMKGRFVKR AAALPPLPLP RHQHPPPPPP RALPPVPMML APRGAHGRYR  420
F

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	95	101	LKRRPRT
2	349	365	RRTRLFAKKIRYEVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25440.1	1e-23	CO-like family protein

Link Out ? help Back to Top
Ensembl	ONIVA03G32910.1