PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA03G30460.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

GRF

Protein Properties

Length: 426aa MW: 47738.9 Da PI: 9.6613

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA03G30460.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	75.3	6.6e-24	151	195	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++++++k+CErH++r+r+rsrk++e+ ONIVA03G30460.1 151 DPEPGRCRRTDGKKWRCSKEAMADHKYCERHINRNRHRSRKPVEN 195 79****************************************997 PP
2	QLQ	57.2	5e-20	92	127	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FT++Q+++L++Q+l+yKyL+a++P+P+ Ll i+k ONIVA03G30460.1 92 PFTPSQWMELEHQALIYKYLNAKAPIPSSLLISISK 127 9******************************99975 PP

Sequence ? help Back to Top
Protein Sequence Length: 426 aa Download sequence
MFADFSAAAM ELGEVLGLQG LTVPSTKEGD LSLIKRAAAG SFTQAAAASY PSPFLDEQKM 60 LRFAKAAHTL PSGLDFGREN EQRFLLSRTK RPFTPSQWME LEHQALIYKY LNAKAPIPSS 120 LLISISKSFR SSANRMSWRP LYQGFPNADS DPEPGRCRRT DGKKWRCSKE AMADHKYCER 180 HINRNRHRSR KPVENQSRKT VKETPCAGSL PSSVGQGSFK KAKVNEMKPG SISYWTDSLN 240 RTMANKEKGN KAAEENNGPL LNLTNQQPTL SLFSQLKQQN KPDKFNTAGD SESISSNTML 300 KPWESSNQQN NKSIPFTKMH DRGCLQSVLQ NFSLPKDEKM EFQKSKDSNV MTVPSTFYSS 360 PEDPRVSCHA PNMAQMQEDS ISSSWEMPQG GPLGEILTNS KNPDDSIMKP EARPYGWLLN 420 LEDHAM

Sequence ? help Back to Top

Protein Sequence Length: 426 aa Download sequence

MFADFSAAAM ELGEVLGLQG LTVPSTKEGD LSLIKRAAAG SFTQAAAASY PSPFLDEQKM  60
LRFAKAAHTL PSGLDFGREN EQRFLLSRTK RPFTPSQWME LEHQALIYKY LNAKAPIPSS  120
LLISISKSFR SSANRMSWRP LYQGFPNADS DPEPGRCRRT DGKKWRCSKE AMADHKYCER  180
HINRNRHRSR KPVENQSRKT VKETPCAGSL PSSVGQGSFK KAKVNEMKPG SISYWTDSLN  240
RTMANKEKGN KAAEENNGPL LNLTNQQPTL SLFSQLKQQN KPDKFNTAGD SESISSNTML  300
KPWESSNQQN NKSIPFTKMH DRGCLQSVLQ NFSLPKDEKM EFQKSKDSNV MTVPSTFYSS  360
PEDPRVSCHA PNMAQMQEDS ISSSWEMPQG GPLGEILTNS KNPDDSIMKP EARPYGWLLN  420
LEDHAM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	2e-34	GRF family protein

Link Out ? help Back to Top
Ensembl	ONIVA03G30460.1