PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA03G28370.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 859aa MW: 93520.4 Da PI: 6.6202 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.6 | 4.3e-18 | 33 | 90 | 4 | 57 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++t+eq+e+Le+++ ++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ ONIVA03G28370.1 33 YVRYTPEQVEALERVYGECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 90 6789****************************************************97 PP | |||||||
2 | START | 174.4 | 7.1e-55 | 181 | 388 | 2 | 204 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galql 93 +aee+++e+++ka+ ++ Wv+++ +++g++++ +++ s+++sg a+ra+g+v +++ v+e+l+d++ W ++++ +++l vi +g g+++l ONIVA03G28370.1 181 IAEETLAEFLSKATGTAVDWVQMVGMKPGPDSIGIIAVSHNCSGVAARACGLVSLEPT-KVAEILKDRPSWYRDCRCVDVLHVIPTGngGTIEL 273 68999*****************************************************.8888888888************************* PP EEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHH CS START 94 mvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrs 183 ++++++a+++l++ Rdf+++Ry+ l++g++vi+++S+++ + p+ ++++vRae+lpSg+li+p+++g+s +++v+hvdl++++++++lr+ ONIVA03G28370.1 274 IYMQTYAPTTLAApRDFWILRYTSGLEDGSLVICERSLTQSTGGPSgpnTPNFVRAEVLPSGYLIRPCEGGGSMIHIVDHVDLDAWSVPEVLRP 367 ***********999****************************9999999********************************************* PP HHHHHHHHHHHHHHHHTXXXX CS START 184 lvksglaegaktwvatlqrqc 204 l++s + ++k++ a+l++ + ONIVA03G28370.1 368 LYESPKILAQKMTIAALRHIR 388 ****************99865 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 859 aa Download sequence |
MAAAMVAAVH GVGRQDRSSP GGGGAPQVDT GKYVRYTPEQ VEALERVYGE CPKPSSLRRQ 60 QLIRECPILS NIEPKQIKVW FQNRRCREKQ RKEASRLQTV NRKLTAMNKL LMEENDRLQK 120 QVSRLVYENG YMRQQLHNPS VATTDTSCES VVTSGQHHQQ QNPAATRPQR DANNPAGLLA 180 IAEETLAEFL SKATGTAVDW VQMVGMKPGP DSIGIIAVSH NCSGVAARAC GLVSLEPTKV 240 AEILKDRPSW YRDCRCVDVL HVIPTGNGGT IELIYMQTYA PTTLAAPRDF WILRYTSGLE 300 DGSLVICERS LTQSTGGPSG PNTPNFVRAE VLPSGYLIRP CEGGGSMIHI VDHVDLDAWS 360 VPEVLRPLYE SPKILAQKMT IAALRHIRQI AHESSGEMPY GGGRQPAVLR TFSQRLSRGF 420 NDAVNGFPDD GWSLMSSDGA EDVTIAFNSS PNKLVGSHVN SSQLFSAIGG GILCAKASML 480 LQNVPPALLV RFLREHRSEW ADPGVDAYSA AALRASPYAV PGLRAGGFMG SQVILPLAHT 540 LEHEEFLEVI RLEGHSLCHD EVVLSRDMYL LQLCSGVDEN AAGACAQLVF APIDESFADD 600 APLLPSGFRV IPLDGKTDAP SVTRTLDLAS TLEVGSGGTT RASSDTSSTC NTRSVLTIAF 660 QFSYENHLRE SVAAMARQYV RTVVASVQRV AMAIAPSRLG GQIETKNPPG SPEAHTLARW 720 IGRSYRFHTG ADLLRTDSQS MDSSLKAMWQ HSDSIMCCSL KAAPVFTFAN QAGLDMLETT 780 LIALQDISLE KILDDDGRKA LCTEFPKIMQ QGFAYLPGGV CVSSMGRPVS YEQAVAWKVL 840 SDDDTPHCLA FMFVNWSFV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34710.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Ensembl | ONIVA03G28370.1 |