PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA03G28290.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | LSD | ||||||||
Protein Properties | Length: 274aa MW: 29338 Da PI: 9.4936 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 41.6 | 2e-13 | 131 | 155 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr +L+YP GApsV+CalC+++ ONIVA03G28290.2 131 CHGCRSVLRYPSGAPSVCCALCQAI 155 ***********************97 PP | |||||||
2 | zf-LSD1 | 38.9 | 1.4e-12 | 172 | 196 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+Y+r+A VRC++C tV ONIVA03G28290.2 172 CGGCRTLLMYTRNADTVRCSCCSTV 196 ***********************99 PP | |||||||
3 | zf-LSD1 | 48.2 | 1.8e-15 | 210 | 233 | 1 | 24 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 Cg+Crt+L+YP+GApsV+Ca+C+ ONIVA03G28290.2 210 CGQCRTTLMYPYGAPSVKCAICHY 233 **********************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 274 aa Download sequence |
MTSRAEPYFP RPPSSSLPSS PFPLCSISFL PPVVCVSPQI NPIQNQPPRR PPPQPHPPRD 60 SSSSSSSPAR GAAALLLVLG RSPRSWRASL PWSHHHHYSL QARGGWSTLR WSRLLPAAAA 120 AAPGMQSQIV CHGCRSVLRY PSGAPSVCCA LCQAITTVPP PAPVMEMAHL ICGGCRTLLM 180 YTRNADTVRC SCCSTVNLVR PVNNIAHVSC GQCRTTLMYP YGAPSVKCAI CHYITNTGPT 240 SRPQNVTVVV ENPMTVDEKG KLVSNVVVGV TTGK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20380.2 | 1e-58 | LSD family protein |
Link Out ? help Back to Top | |
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Ensembl | ONIVA03G28290.2 |