PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA03G28290.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family LSD
Protein Properties Length: 319aa    MW: 33689.7 Da    PI: 9.4139
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA03G28290.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD141.32.5e-13131155125
          zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                      C+gCr +L+YP GApsV+CalC+++
  ONIVA03G28290.1 131 CHGCRSVLRYPSGAPSVCCALCQAI 155
                      ***********************97 PP

2zf-LSD138.61.7e-12172196125
          zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                      CggCrtlL+Y+r+A  VRC++C tV
  ONIVA03G28290.1 172 CGGCRTLLMYTRNADTVRCSCCSTV 196
                      ***********************99 PP

3zf-LSD147.92.2e-15210233124
          zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdt 24 
                      Cg+Crt+L+YP+GApsV+Ca+C+ 
  ONIVA03G28290.1 210 CGQCRTTLMYPYGAPSVKCAICHY 233
                      **********************96 PP

Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    
MTSRAEPYFP RPPSSSLPSS PFPLCSISFL PPVVCVSPQI NPIQNQPPRR PPPQPHPPRD  60
SSSSSSSPAR GAAALLLVLG RSPRSWRASL PWSHHHHYSL QARGGWSTLR WSRLLPAAAA  120
AAPGMQSQIV CHGCRSVLRY PSGAPSVCCA LCQAITTVPP PAPVMEMAHL ICGGCRTLLM  180
YTRNADTVRC SCCSTVNLVR PVNNIAHVSC GQCRTTLMYP YGAPSVKCAI CHYITNTGMN  240
TVAPTPSPMP TSSGSSYNAP PSGSSYNAPP SGSSYNAPPP TSAPTSRPQN VTVVVENPMT  300
VDEKGKLVSN VVVGVTTGK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.21e-53LSD family protein