PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA03G23880.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

C2H2

Protein Properties

Length: 417aa MW: 44376.1 Da PI: 6.7122

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA03G23880.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.9	0.00071	355	377	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C+k F + L H r+H ONIVA03G23880.1 355 FVCPICSKEFGSGQALGGHKRSH 377 89**************9999998 PP

Sequence ? help Back to Top
Protein Sequence Length: 417 aa Download sequence
MDDDDVVVLS SASATRHSCK VCGKGFACGR SLGGHMRSHS LTEVDAVAAA VAPAYERADD 60 DEGGDGKMVR RWMQSGGGYG LRENPKKTRR LSAGSGGGGG GGDNDDGDAC HHRGGDLLSS 120 SSCRPVLGRV RSHAPPAGGA AYVDDSEDVG VDVDGGGGDD RYRDREMLVM AAPRRRPRSM 180 RVPAPVRDEF VVDEEPEDVA LCLVMLSRDT GRPWNSRPSD EYSSLMYNSS YHHHHDAVSD 240 DDLELSLSSP YADTEIRTKK RRKTTGAAST AGGEKRGRYE CHGCGRAFLS YQALGGHRAS 300 HKRINSNCSL VKPPADQPEP SIETSFSSAS TSVSPADTMI SAATISKTVK KATKFVCPIC 360 SKEFGSGQAL GGHKRSHSIA SELYERGHAD GIVKLEQPLL ADRFLDLNLP APGGDDG

Sequence ? help Back to Top

Protein Sequence Length: 417 aa Download sequence

MDDDDVVVLS SASATRHSCK VCGKGFACGR SLGGHMRSHS LTEVDAVAAA VAPAYERADD  60
DEGGDGKMVR RWMQSGGGYG LRENPKKTRR LSAGSGGGGG GGDNDDGDAC HHRGGDLLSS  120
SSCRPVLGRV RSHAPPAGGA AYVDDSEDVG VDVDGGGGDD RYRDREMLVM AAPRRRPRSM  180
RVPAPVRDEF VVDEEPEDVA LCLVMLSRDT GRPWNSRPSD EYSSLMYNSS YHHHHDAVSD  240
DDLELSLSSP YADTEIRTKK RRKTTGAAST AGGEKRGRYE CHGCGRAFLS YQALGGHRAS  300
HKRINSNCSL VKPPADQPEP SIETSFSSAS TSVSPADTMI SAATISKTVK KATKFVCPIC  360
SKEFGSGQAL GGHKRSHSIA SELYERGHAD GIVKLEQPLL ADRFLDLNLP APGGDDG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	173	179	PRRRPRS
2	259	263	KKRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60580.1	4e-20	C2H2 family protein

Link Out ? help Back to Top
Ensembl	ONIVA03G23880.1