PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA03G20840.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 236aa    MW: 25347.7 Da    PI: 6.8057
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA03G20840.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.91.8e-08156196954
                      HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  ONIVA03G20840.1 156 ARLRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 196
                      699*****************87.....8****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    
MDFDLFNSYP ESQLDLMSTM LQLEQLTALS DQSLFMAAPT SPPVSPMGTP SPQFSPPPQM  60
SVTTTTAGGG YQDQYNSMPA TYGAGAGVHQ LDFAMSSPGS DSGAPQGSSS SSSSEAMREM  120
IFHIAALQPV EIDPEAVRPP KRRNVRISKD PQSVAARLRR ERISERIRIL QRLVPGGTKM  180
DTASMLDEAI HYVKFLKSQV QSLERAAAAT GAAAHRAAAF GAAYPAALPM QHHAPW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1138143RPPKRR
2157162RLRRER
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67060.14e-39bHLH family protein