PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA03G20220.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

HD-ZIP

Protein Properties

Length: 351aa MW: 36420.6 Da PI: 6.391

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA03G20220.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.9	2e-19	104	157	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe+ +++ e++++LA+ lgL+ rqV +WFqNrRa++k ONIVA03G20220.1 104 KKRRLSVEQVRTLERSFESGNKLEPERKAQLARALGLQPRQVAIWFQNRRARWK 157 456899***********************************************9 PP
2	HD-ZIP_I/II	127.8	4.6e-41	103	194	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrls eqv++LE+sFe+ +kLeperK++lar+Lglqprqva+WFqnrRAR+ktkqlEkd++aL+r++da ++en++L + +++L++e+ ONIVA03G20220.1 103 EKKRRLSVEQVRTLERSFESGNKLEPERKAQLARALGLQPRQVAIWFQNRRARWKTKQLEKDFDALRRQLDAARAENDALLSLNSKLHAEIV 194 69**************************************************************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence
MASNGAAAGA MAPFFPPNFL LQMQQPLPLH HQHLQDHAHG GHGGHHLLPP PPPSLSPFLP 60 DLAMDAPPPP MYEASGGDGG GGGAASEDEE DGCGGGGGGG GGEKKRRLSV EQVRTLERSF 120 ESGNKLEPER KAQLARALGL QPRQVAIWFQ NRRARWKTKQ LEKDFDALRR QLDAARAEND 180 ALLSLNSKLH AEIVALKGGA AAAGGGGSSC RQEAASELIN LNVKETEASC SNRSENSSEI 240 NLDISRPAPP PPPPPANESP VNRGIPFYAS IGRGGAGGVD IDQLLLRGGH SPSPAAVTTP 300 PPPKMELGIT GNGGGADAVA AGAGSFGGLL CGAVDEQPPF WPWADGHHHF H

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence

MASNGAAAGA MAPFFPPNFL LQMQQPLPLH HQHLQDHAHG GHGGHHLLPP PPPSLSPFLP  60
DLAMDAPPPP MYEASGGDGG GGGAASEDEE DGCGGGGGGG GGEKKRRLSV EQVRTLERSF  120
ESGNKLEPER KAQLARALGL QPRQVAIWFQ NRRARWKTKQ LEKDFDALRR QLDAARAEND  180
ALLSLNSKLH AEIVALKGGA AAAGGGGSSC RQEAASELIN LNVKETEASC SNRSENSSEI  240
NLDISRPAPP PPPPPANESP VNRGIPFYAS IGRGGAGGVD IDQLLLRGGH SPSPAAVTTP  300
PPPKMELGIT GNGGGADAVA AGAGSFGGLL CGAVDEQPPF WPWADGHHHF H

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	152	160	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69780.1	7e-46	HD-ZIP family protein

Link Out ? help Back to Top
Ensembl	ONIVA03G20220.1