PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA03G17860.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | ERF | ||||||||
Protein Properties | Length: 243aa MW: 26109.4 Da PI: 7.4056 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.1 | 5e-19 | 66 | 115 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r+++ +g+W+AeIrdp + +r++lg+f tae Aa+a+++a+++++g ONIVA03G17860.1 66 LYRGIRRRP-WGKWAAEIRDPAK---GARVWLGTFATAEAAARAYDRAARRIRG 115 69*******.**********843...4*************************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence |
MCGGAIPLIS SRGPGGKRSL SAADELWPPP PQHASDDPAE QAAADEEEQE QQPAARRQRR 60 GERRTLYRGI RRRPWGKWAA EIRDPAKGAR VWLGTFATAE AAARAYDRAA RRIRGTKAKV 120 NFPNEDNAFA AAPPPYHLAA YYGDASSTSY LYPMAMTPAA AGLRQQQLMT TTAVEYSVND 180 AVDVASVYFQ PPPPAVACEF SAVGGGAVVV PVSAVAPAMT YGQSQEVAAP LMWNFDDITA 240 MPM |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 56 | 74 | RRQRRGERRTLYRGIRRRP |
2 | 59 | 77 | RRQRRGERRTLYRGIRRRP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16770.1 | 9e-21 | ERF family protein |
Link Out ? help Back to Top | |
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Ensembl | ONIVA03G17860.1 |