PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA03G17000.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | C3H | ||||||||
Protein Properties | Length: 708aa MW: 75450.9 Da PI: 6.9022 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23 | 1.4e-07 | 233 | 253 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C ++ar G+Ck G++C+F Hg ONIVA03G17000.1 233 PCLYYAR-GFCKNGSTCRFVHG 253 8******.*************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 708 aa Download sequence |
MDAYEATKVV FSRIQALDPD HAAKIMGLLL IQDHGDKEMI RLAFGPEALL HSVMAQARKE 60 LALLPPPQAA SSSPTVPAAH SPFLLSRQNS GRCPAPSPSS WAQAQPFSRS NSMGNGGAAD 120 EMVGAGEELM SPLNGGGGAA ANAPPFFPRG GDALLDDFEL QEQLAFLHDG AGGVNPGHAL 180 QAFDGAECRS PGPGESGGML PYGLAWANGG PGHRRSASVN ELCLGGDGFG WKPCLYYARG 240 FCKNGSTCRF VHGGLSDDAA MDAATAEQQQ CQDFLLRSKS QRLGPAAFPF TPTGSLPASP 300 SATSKCLSLL LQQQQQHNDN QRAAAAALML AGGDEAHKFM GRPRLDRVDF ASMMNPGSRQ 360 IYLTFPADST FREEDVSNYF RYIMRCCNDA SSFFHGGLGR TRSDWHFCIA VLGNAPRCSI 420 YGPVHDVRIP YQQKRMFGFV TFVYPETVKL ILAKGNPHFI CDARVLVKPY KEKGKVPDKY 480 RKQQQGDFCC MSPTGLDARD PFDFHQLGAR MLQHSNSANE LMLRRKLEEQ QQAAELQQAI 540 DLHSRRLIGL QLLDLKSSAA VHAAETTTMS LPTPITNAFT SGQPGATTIV ESPPSSTGQL 600 MASCGSPSEG KVVNGGNKAD SAGEVTRNAD SDQSGEHNLP DSPFASSTKS TAFSTATAAT 660 AIGSEGDFTT GSSCNIGGSA VGGANPLRPP TLDIPSPRTC FFPMPRNT |
Link Out ? help Back to Top | |
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Ensembl | ONIVA03G17000.1 |