PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA03G17000.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C3H
Protein Properties Length: 708aa    MW: 75450.9 Da    PI: 6.9022
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA03G17000.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH231.4e-07233253526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      +C ++ar G+Ck G++C+F Hg
  ONIVA03G17000.1 233 PCLYYAR-GFCKNGSTCRFVHG 253
                      8******.*************8 PP

Sequence ? help Back to Top
Protein Sequence    Length: 708 aa     Download sequence    
MDAYEATKVV FSRIQALDPD HAAKIMGLLL IQDHGDKEMI RLAFGPEALL HSVMAQARKE  60
LALLPPPQAA SSSPTVPAAH SPFLLSRQNS GRCPAPSPSS WAQAQPFSRS NSMGNGGAAD  120
EMVGAGEELM SPLNGGGGAA ANAPPFFPRG GDALLDDFEL QEQLAFLHDG AGGVNPGHAL  180
QAFDGAECRS PGPGESGGML PYGLAWANGG PGHRRSASVN ELCLGGDGFG WKPCLYYARG  240
FCKNGSTCRF VHGGLSDDAA MDAATAEQQQ CQDFLLRSKS QRLGPAAFPF TPTGSLPASP  300
SATSKCLSLL LQQQQQHNDN QRAAAAALML AGGDEAHKFM GRPRLDRVDF ASMMNPGSRQ  360
IYLTFPADST FREEDVSNYF RYIMRCCNDA SSFFHGGLGR TRSDWHFCIA VLGNAPRCSI  420
YGPVHDVRIP YQQKRMFGFV TFVYPETVKL ILAKGNPHFI CDARVLVKPY KEKGKVPDKY  480
RKQQQGDFCC MSPTGLDARD PFDFHQLGAR MLQHSNSANE LMLRRKLEEQ QQAAELQQAI  540
DLHSRRLIGL QLLDLKSSAA VHAAETTTMS LPTPITNAFT SGQPGATTIV ESPPSSTGQL  600
MASCGSPSEG KVVNGGNKAD SAGEVTRNAD SDQSGEHNLP DSPFASSTKS TAFSTATAAT  660
AIGSEGDFTT GSSCNIGGSA VGGANPLRPP TLDIPSPRTC FFPMPRNT