PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA03G12280.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

bHLH

Protein Properties

Length: 409aa MW: 43113.3 Da PI: 5.6172

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA03G12280.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42.2	1.5e-13	201	247	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN +++Lr+llP+ +K +Ka+ L ++++++k+L ONIVA03G12280.1 201 KSHSEAERRRRERINAHLARLRSLLPNT-----TKTDKASLLAEVIQHVKEL 247 79***********************9.....8**************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence
MGAHGDHRHH HHHQEAGVLV DEEEEEVIEQ ACGGPTSGVV EQEVGGDGGG VCQDAAGMVF 60 EATSSVGSVS ATMGPPPIMC WPPPAQPVHG AIHHHHNLGG GGGQQSPFFP LLPPLPPQPP 120 PPPPFFADFY ARRALQYAYD HSGGASSSSD PLGLGGLYMG HHGSHVAGMM MPPPFAPSPF 180 GDLGRMTAQE IMDAKALAAS KSHSEAERRR RERINAHLAR LRSLLPNTTK TDKASLLAEV 240 IQHVKELKRQ TSEITEEACP LPTESDELTV DASSDEDGRL VVRASLCCDD RTDLLPDLIR 300 ALKALRLRAL KAEITTLGGR VKNVLVVTGD DSAAAAACAG TDGDGEQQEE AMQAPMSPQH 360 TVASIQDALR AVMERTASAT EESGGSGAGG GLKRQRTTSL SAILENRSI

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence

MGAHGDHRHH HHHQEAGVLV DEEEEEVIEQ ACGGPTSGVV EQEVGGDGGG VCQDAAGMVF  60
EATSSVGSVS ATMGPPPIMC WPPPAQPVHG AIHHHHNLGG GGGQQSPFFP LLPPLPPQPP  120
PPPPFFADFY ARRALQYAYD HSGGASSSSD PLGLGGLYMG HHGSHVAGMM MPPPFAPSPF  180
GDLGRMTAQE IMDAKALAAS KSHSEAERRR RERINAHLAR LRSLLPNTTK TDKASLLAEV  240
IQHVKELKRQ TSEITEEACP LPTESDELTV DASSDEDGRL VVRASLCCDD RTDLLPDLIR  300
ALKALRLRAL KAEITTLGGR VKNVLVVTGD DSAAAAACAG TDGDGEQQEE AMQAPMSPQH  360
TVASIQDALR AVMERTASAT EESGGSGAGG GLKRQRTTSL SAILENRSI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	207	212	ERRRRE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	3e-54	bHLH family protein

Link Out ? help Back to Top
Ensembl	ONIVA03G12280.1