PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA03G11750.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C3H
Protein Properties Length: 388aa    MW: 40047.6 Da    PI: 7.0929
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA03G11750.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.41e-07324347327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                       +lC+ +++ G C+ G+ C+++Hg+
  ONIVA03G11750.1 324 IALCSKWRK-GRCHNGAACRYSHGE 347
                      589******.*************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    
MADPNGRRRL PTGDPDQANA SPSRRVSAVD GVTGGEGRPT YSHFPPGAYE PTDVAYGIRD  60
AANDERARGR ARARHDQGGG AHDHHHDRPR QDQRGEAHLH DLPGEKSEVP DVGPSDQQGK  120
EASDTDMAPL AALAKRSYDV NFPPLHEHSA APFPAPAPAS APAPAGTMGS SSAQVQGDGA  180
PDNHDHDPRH LPRQDQSGGA HPDDLHGEKT IGSGSDILDD SKRGMINAGP QHGRITTSNG  240
GSGSGSDKGK GVSYAGDKPA SSSSSSSSAG QQGSDTDKTP SAAAASSYAV NFPPLLPASA  300
PVPAPAPAPA VAGAMGVANA HHKIALCSKW RKGRCHNGAA CRYSHGEEEQ RIVPEMRVGG  360
GGRPCPELAA AKGWCRYGLN CKYCHGGV