PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA03G11070.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

LBD

Protein Properties

Length: 322aa MW: 33533.9 Da PI: 8.2854

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA03G11070.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	118.2	4.9e-37	37	123	1	86
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r+da+ +++yeA+ar+rdPvyG+v++i++lqqq ONIVA03G11070.1 37 PCGACKFLRRKCVSGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLLQIPAHKRPDAVVTICYEAQARLRDPVYGCVAHIFALQQQ 123 7*********************9989********************************************************9 PP
2	DUF260	45.6	2.1e-14	140	184	56	100
DUF260 56 damsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 da+ +++yeA+ar+rdPvyG+v++i++lqqq+ +l+ael +l+++ ONIVA03G11070.1 140 DAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNLQAELTYLQAH 184 7999************************************99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence
MSSGGGASSA LGGGGGGGGS GGGGGGPSGG GGGGGGPCGA CKFLRRKCVS GCIFAPYFDS 60 EQGAAHFAAV HKVFGASNVS KLLLQIPAHK RPDAVVTICY EAQARLRDPV YGCVAHIFAL 120 QQQFLRRKCV SGCIFAPYSD AVVTICYEAQ ARLRDPVYGC VAHIFALQQQ VVNLQAELTY 180 LQAHLATLEL PSPPPLMPAP PQMPMPAPFS ISDLPSSTSV PTTVDLSALF DPPPQPQWAS 240 PLQQQQQHHH QHHHHQQQQH QLRQPSYATL ARAPSGMTAA AESSGGGGGG GGGDLQALAR 300 ELLDRHRSAV KLEQPPPPHS RS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00220.1	4e-60	LBD family protein

Link Out ? help Back to Top
Ensembl	ONIVA03G11070.1