PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | ONIVA03G10440.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 240aa MW: 24529 Da PI: 7.2531 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.4 | 0.00023 | 80 | 102 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H ONIVA03G10440.1 80 FTCNYCQRKFFSSQALGGHQNAH 102 89*****************9988 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 240 aa Download sequence |
MKSSSQEAGE EVSEISSQAA SNNNETCNSS SGKVSLDLSL TVAAAAAAAA SATESSTTDS 60 GGTRPAATAT ATAREPARVF TCNYCQRKFF SSQALGGHQN AHRRERTLAR RAVRLDAFPY 120 GYADVASLPL YGAGLYPIGI QAHASVHHHH PGVAAPAGRA ELRSARALLG PMPFFVQAAG 180 DEDASFGWPG SFRPPPTAAT TIPAAAAAPV AVNSGSSNSN HGGSVVVQAA ADEPDLTLRL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G66140.1 | 2e-11 | C2H2 family protein |
Link Out ? help Back to Top | |
---|---|
Ensembl | ONIVA03G10440.1 |