PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA03G10380.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

C2H2

Protein Properties

Length: 420aa MW: 44367.1 Da PI: 10.3819

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA03G10380.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	21.3	7e-07	79	101	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++Cg+ F r nL+ H r+H ONIVA03G10380.1 79 YVCEICGQGFQREQNLQMHRRRH 101 9*********************9 PP
2	zf-C2H2	10.8	0.0015	179	201	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C C k + +s++k H++t+ ONIVA03G10380.1 179 WVCARCAKGYAVQSDYKAHLKTC 201 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 420 aa Download sequence
MALVKSHHQM LASSSTSSSS PSSQQQQPPP PASNSSSLAA AAADQPSPAK RKRRPPGTPD 60 PDAEVVALSP RTLLESDRYV CEICGQGFQR EQNLQMHRRR HKVPWRLVKR PAAATAAEDG 120 GAAGGGGGAG GGAGGGGARK RVFVCPEPSC LHHDPAHALG DLVGIKKHFR RKHGGRRQWV 180 CARCAKGYAV QSDYKAHLKT CGTRGHSCDC GRVFSRVESF IEHQDACNSG RVRGEVVPVA 240 TTLPVIPPPG VHHGAVGRRV LVQLHDHHDH RLLPRATRQQ AITMNLQLSI GPAAVVAAAS 300 GGGGACAAAA GGEEEQQREE VRRALEEKTA ADAARERARE EAAAAERALE DARRARHRAR 360 GELEKALALR DHAARLIAQV TCHACRQRSL AVMSMAAIDG HGASAVAREH LRGGGVGAGI

Sequence ? help Back to Top

Protein Sequence Length: 420 aa Download sequence

MALVKSHHQM LASSSTSSSS PSSQQQQPPP PASNSSSLAA AAADQPSPAK RKRRPPGTPD  60
PDAEVVALSP RTLLESDRYV CEICGQGFQR EQNLQMHRRR HKVPWRLVKR PAAATAAEDG  120
GAAGGGGGAG GGAGGGGARK RVFVCPEPSC LHHDPAHALG DLVGIKKHFR RKHGGRRQWV  180
CARCAKGYAV QSDYKAHLKT CGTRGHSCDC GRVFSRVESF IEHQDACNSG RVRGEVVPVA  240
TTLPVIPPPG VHHGAVGRRV LVQLHDHHDH RLLPRATRQQ AITMNLQLSI GPAAVVAAAS  300
GGGGACAAAA GGEEEQQREE VRRALEEKTA ADAARERARE EAAAAERALE DARRARHRAR  360
GELEKALALR DHAARLIAQV TCHACRQRSL AVMSMAAIDG HGASAVAREH LRGGGVGAGI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	50	55	KRKRRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01940.1	1e-87	C2H2 family protein

Link Out ? help Back to Top
Ensembl	ONIVA03G10380.1