PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA03G00860.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GRAS
Protein Properties Length: 500aa    MW: 54310.7 Da    PI: 6.5618
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA03G00860.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS253.39.3e-781294992374
             GRAS   2 velLlecAeavssgdlelaqalLar..lsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetsekn...sseelaalklfsevsP 89 
                      ve+L+++A+  ++gd  +a+++Lar  ++ +  ++++ p+ R a yf+ AL++ l +  +  +++ pp + +e +      +l+++k fs++sP
  ONIVA03G00860.1 129 VEQLVQAAKLTEAGDVLAARHILARpaINYRlPASAAPPLLRSALYFKDALRRALISDDDDSSSSTPPPPLHEPHphdLLLKLTSYKSFSDLSP 222
                      689*********************85466656777889******************977777777766555544444488899999******** PP

             GRAS  90 ilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefn 179
                      +l f+h+t+ qa+l++++ + +++H +Dfdi+ G QW++L++ La R  +   l++T+++  +s+   +  +l+ +++ L+ fA+ l vpf+f 
  ONIVA03G00860.1 223 LLHFAHFTCVQAVLDELAPSaSCIHLLDFDIGVGEQWASLMHDLAHRH-PGVALKVTALNVTASSsshHPLQLQLIHDTLSTFAADLSVPFRFA 315
                      ****************9988799************************6.44799***998876666668899********************** PP

             GRAS 180 vlvakrledleleeL.rvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                      ++   +l++ +l  L +v    +a+aV+l +   +      +     ++vL+lv++l +k+vv v++ +d+++ +F++++l+al+  ++l++sl
  ONIVA03G00860.1 316 AF---NLDATDLTPLlAVAAaTDAIAVHLPVGSVHAT----A----VPSVLHLVRRLGAKLVVSVDRGCDRGELPFAAHLLQALRSTVSLLESL 398
                      *7...5555555554255557*********9888887....4....456********************************************* PP

             GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdr 365
                      +a  +++s+ ++k+Er++++++i+++v ++      +++ ++ Wr+ l +aGF pv++s+ a++qa++ll+k +++g+r+e + gsl+l W++ 
  ONIVA03G00860.1 399 DAM-GTDSDVAAKIERFWVQPKIQECVRAAVGV-GGDKTAASAWRATLASAGFVPVQVSSMAEAQAESLLKKLPVRGFRLERRAGSLFLHWQRG 490
                      998.99*********************988776.6888899***************************************************** PP

             GRAS 366 pLvsvSaWr 374
                      +L svSaWr
  ONIVA03G00860.1 491 ELASVSAWR 499
                      ********8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    
MWGWGRERCS LPALEREKRE GEIELVDVWG PSSSSFTLTS PGLRPPTHAA STPPPPPWLD  60
DADHHHDNAF LHWVINDHHH PLLDLDDVDL DYAKPAPFFF ADRGLHHHHP ASSSFPNPKP  120
TADDNTSTVE QLVQAAKLTE AGDVLAARHI LARPAINYRL PASAAPPLLR SALYFKDALR  180
RALISDDDDS SSSTPPPPLH EPHPHDLLLK LTSYKSFSDL SPLLHFAHFT CVQAVLDELA  240
PSASCIHLLD FDIGVGEQWA SLMHDLAHRH PGVALKVTAL NVTASSSSHH PLQLQLIHDT  300
LSTFAADLSV PFRFAAFNLD ATDLTPLLAV AAATDAIAVH LPVGSVHATA VPSVLHLVRR  360
LGAKLVVSVD RGCDRGELPF AAHLLQALRS TVSLLESLDA MGTDSDVAAK IERFWVQPKI  420
QECVRAAVGV GGDKTAASAW RATLASAGFV PVQVSSMAEA QAESLLKKLP VRGFRLERRA  480
GSLFLHWQRG ELASVSAWRC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.12e-56GRAS family protein