PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA02G41200.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

C3H

Protein Properties

Length: 665aa MW: 73420.2 Da PI: 4.9998

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA02G41200.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.8	1.4e-06	113	134	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C +f++ G C GdrC F H ONIVA02G41200.1 113 VPCYYFQK-GMCVKGDRCAFLHL 134 69****.***********6 PP

Sequence ? help Back to Top
Protein Sequence Length: 665 aa Download sequence
MDSAVRPPVD AEEARRRRST DCIYFLASPL TCKKGSECEY RHSDAARMNP RDCWYWFNGN 60 CANPKCSFRH PPLDGLVGAP TTPRTSQQSA PQVSVPAQAP VPNPASGTAK QGVPCYYFQK 120 GMCVKGDRCA FLHLPQATGS PAPQHTTKVF APASVPHPQL KNSWTKPNSS AQQNAPPAIF 180 DKPKDSAHNG KTAQKQNLTN RPGHSSGIIH DKKGSYMPSG VTKNYRPPPS TGDDLAENGV 240 EMGEFVREPS AGSDVLTGGA DDNTEQSLRE DRGAYRRTNG EQHIGMLRQT HDSYGFERSH 300 RGSAEKLLSE SRFSQREPMP LTADSSDLRQ RLLKQRRLNN PRSGQVSDRH NVYPEDERHD 360 RHRRRGEEQA SNDGVSSSRL RGRIRLPAET TFDRLGLQPE KERDRGPRAR LSPPSQTDLR 420 GKLHDRLKAK PNEDVSGNVQ SSLSKANEDA ESLNFAGPKS LAELKAKKVA GSLMKSSRSL 480 TGPVRMTSEI VTIKDSSDPV LFDGPKPLNA ILKRKREADS GNATDFGSKR EEHSGGDEEG 540 SQNDFRNIED DIVGMNTEGN GEEAFRSDDI VGMNTEGNGE EAFQPEDDVV YGDSLSPADD 600 IAAEAADDAS RELEEQQDVE TAEEYDYEMD DVNAAEENDY QEYEDEDDDL EDDDDFARKV 660 GVMIT

Sequence ? help Back to Top

Protein Sequence Length: 665 aa Download sequence

MDSAVRPPVD AEEARRRRST DCIYFLASPL TCKKGSECEY RHSDAARMNP RDCWYWFNGN  60
CANPKCSFRH PPLDGLVGAP TTPRTSQQSA PQVSVPAQAP VPNPASGTAK QGVPCYYFQK  120
GMCVKGDRCA FLHLPQATGS PAPQHTTKVF APASVPHPQL KNSWTKPNSS AQQNAPPAIF  180
DKPKDSAHNG KTAQKQNLTN RPGHSSGIIH DKKGSYMPSG VTKNYRPPPS TGDDLAENGV  240
EMGEFVREPS AGSDVLTGGA DDNTEQSLRE DRGAYRRTNG EQHIGMLRQT HDSYGFERSH  300
RGSAEKLLSE SRFSQREPMP LTADSSDLRQ RLLKQRRLNN PRSGQVSDRH NVYPEDERHD  360
RHRRRGEEQA SNDGVSSSRL RGRIRLPAET TFDRLGLQPE KERDRGPRAR LSPPSQTDLR  420
GKLHDRLKAK PNEDVSGNVQ SSLSKANEDA ESLNFAGPKS LAELKAKKVA GSLMKSSRSL  480
TGPVRMTSEI VTIKDSSDPV LFDGPKPLNA ILKRKREADS GNATDFGSKR EEHSGGDEEG  540
SQNDFRNIED DIVGMNTEGN GEEAFRSDDI VGMNTEGNGE EAFQPEDDVV YGDSLSPADD  600
IAAEAADDAS RELEEQQDVE TAEEYDYEMD DVNAAEENDY QEYEDEDDDL EDDDDFARKV  660
GVMIT

Link Out ? help Back to Top
Ensembl	ONIVA02G41200.1