PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA02G41200.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C3H
Protein Properties Length: 665aa    MW: 73420.2 Da    PI: 4.9998
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA02G41200.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.81.4e-06113134426
                      ---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                      ++C +f++ G C  GdrC F H 
  ONIVA02G41200.1 113 VPCYYFQK-GMCVKGDRCAFLHL 134
                      69******.*************6 PP

Sequence ? help Back to Top
Protein Sequence    Length: 665 aa     Download sequence    
MDSAVRPPVD AEEARRRRST DCIYFLASPL TCKKGSECEY RHSDAARMNP RDCWYWFNGN  60
CANPKCSFRH PPLDGLVGAP TTPRTSQQSA PQVSVPAQAP VPNPASGTAK QGVPCYYFQK  120
GMCVKGDRCA FLHLPQATGS PAPQHTTKVF APASVPHPQL KNSWTKPNSS AQQNAPPAIF  180
DKPKDSAHNG KTAQKQNLTN RPGHSSGIIH DKKGSYMPSG VTKNYRPPPS TGDDLAENGV  240
EMGEFVREPS AGSDVLTGGA DDNTEQSLRE DRGAYRRTNG EQHIGMLRQT HDSYGFERSH  300
RGSAEKLLSE SRFSQREPMP LTADSSDLRQ RLLKQRRLNN PRSGQVSDRH NVYPEDERHD  360
RHRRRGEEQA SNDGVSSSRL RGRIRLPAET TFDRLGLQPE KERDRGPRAR LSPPSQTDLR  420
GKLHDRLKAK PNEDVSGNVQ SSLSKANEDA ESLNFAGPKS LAELKAKKVA GSLMKSSRSL  480
TGPVRMTSEI VTIKDSSDPV LFDGPKPLNA ILKRKREADS GNATDFGSKR EEHSGGDEEG  540
SQNDFRNIED DIVGMNTEGN GEEAFRSDDI VGMNTEGNGE EAFQPEDDVV YGDSLSPADD  600
IAAEAADDAS RELEEQQDVE TAEEYDYEMD DVNAAEENDY QEYEDEDDDL EDDDDFARKV  660
GVMIT