PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA02G40990.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | TCP | ||||||||
Protein Properties | Length: 236aa MW: 24165.1 Da PI: 10.7618 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 127.4 | 1.4e-39 | 31 | 141 | 2 | 95 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg..... 88 a++k +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ +++s +s++ ++s + ONIVA02G40990.1 31 AVRKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFStsSPSSLRSNSTSNS-Ndlllp 123 789*************************************************************99999888755555555444444.358888 PP TCP 89 ...............kaaksaa 95 + ++ ONIVA02G40990.1 124 raapfilgkrlraadD----HT 141 7777777766533322....22 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence |
MTTRPDGGGG GGGAPDKQLV PASNANGTAL AVRKPPSKDR HSKVDGRGRR IRMPIICAAR 60 VFQLTRELGH KSDGQTIEWL LRQAEPSIIA ATGTGTTPAS FSTSSPSSLR SNSTSNSNDL 120 LLPRAAPFIL GKRLRAADDH TTSPAPAPDA TAPTQAFWAL PARADFGQLW SFAAAPEMMV 180 AAAAAPAMPG EASAARVGNY LPMAQGNLNL LASFSGGPGG AGATAATGRP EEESAR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23280.1 | 3e-44 | TCP family protein |
Link Out ? help Back to Top | |
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Ensembl | ONIVA02G40990.1 |