PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA02G40650.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 328aa    MW: 34124.7 Da    PI: 8.4912
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA02G40650.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.00055118140123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      y+C+ C+k+F++   L  H  +H
  ONIVA02G40650.1 118 YECKTCNKCFPTFQALGGHRASH 140
                      99**********99999998887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    
MSVEDKHAGV VKRKRTKRPR HHAAPASSSE STTTEEEDMA HCLILLAQGA AVVDSKPSTP  60
APPPPPPPAQ PPVLAAPAPA PPPPQPPVVV VKSERYTSRK YTEAATTADG VRAGFYVYEC  120
KTCNKCFPTF QALGGHRASH KKPRLPGADD DNVNNVTNTN AIVVKSKPPL TTTTTPSAPS  180
PPPPQADAVV VPDVTTVLSL NNVAAAGSII NKLRVHECSI CGAEFGSGQA LGGHMRRHRP  240
LHAPPERAAT TAATTAATAT APDTKKEGST SINLELDLNL PAPSDEESVS PPPPPPPPVL  300
LALGGQFNDG KKPILQLTAS AALVGCHY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.14e-28C2H2 family protein