PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA02G39180.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

HD-ZIP

Protein Properties

Length: 292aa MW: 30516.2 Da PI: 8.418

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA02G39180.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.2	5.9e-18	126	180	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq Le+ F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k ONIVA02G39180.1 126 RKKLRLTKEQSALLEDRFREHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTK 180 788899***********************************************98 PP
2	HD-ZIP_I/II	125.2	3e-40	126	215	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rl+keq++lLE+ F+e+++L+p++Kv+la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL++e +eLr +l ONIVA02G39180.1 126 RKKLRLTKEQSALLEDRFREHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRRLQRELQELR-AL 215 69*************************************************************************************9.55 PP

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence
MAQEDVGHLS DAGLALGLSL GGGGGGTTDA AAAHRGGCRR PSPSSQCPPL EPSLTLSLPD 60 DAAAGAAATA TATASGGGGP AHSVSSLSVG AAAAAAVKRE RAEEADGERV SSTAAGRDDD 120 DDGSTRKKLR LTKEQSALLE DRFREHSTLN PKQKVALAKQ LNLRPRQVEV WFQNRRARTK 180 LKQTEVDCEF LKRCCETLTE ENRRLQRELQ ELRALKFAPP PPSSAAHQPS PAPPAPFYMQ 240 LPAATLTICP SCERVGGPAS AAKVVAADGT KAGPGRTTTH HFFNPFTHSA AC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	125	131	TRKKLRL
2	175	183	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	1e-56	HD-ZIP family protein

Link Out ? help Back to Top
Ensembl	ONIVA02G39180.1