PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA02G38660.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C3H
Protein Properties Length: 445aa    MW: 47417.8 Da    PI: 5.9244
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA02G38660.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH40.93.5e-13372395226
                      -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                      ktelC+ + r G C+yG+rC+FaHg
  ONIVA02G38660.1 372 KTELCNKWER-GACPYGARCRFAHG 395
                      8*********.*************9 PP

2zf-CCCH18.53.6e-06408434127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      ykt +C+ fa+   C+yG rC+F H+p
  ONIVA02G38660.1 408 YKTLPCQMFAAASGCPYGHRCHFRHSP 434
                      9***********************986 PP

Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    
MEGELSFVSP ARSSCFSFEG GGSGSPTWVS TVEALLRSPT SSVSDGGGGG GGGYNSPARA  60
SSPLQKQIPD CRDAGDFSSL TWASTLEKPL ESPSSCISDG RGGGFGSPTS AFPPEKLLIS  120
PPTCVSDNRG VGNGGGFPSL PWASSLERLL TSPSSCVSDS RGVGNADGFP SLPWASSLEK  180
PLTSPSSCVS DGRSGGYSSP LGASAERERE VREAEMLLRA IAERYDDCFL RLRDAAAELS  240
DLHRERLRLA AENLHLSLLL EELESEQRKQ ASAMAPPKLE EDEAAQGGAP KSISIRSPGY  300
LSQKQPQGQA RPQRLRVRAS QAMEISHPNC LIFVMGNQCS PKEAAAAGDE EDEEDKGGGE  360
VEVEAYRQGA AKTELCNKWE RGACPYGARC RFAHGLQELR PVIRHPRYKT LPCQMFAAAS  420
GCPYGHRCHF RHSPLRAAAA ESFCY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.23e-32C3H family protein