PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA02G38660.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

C3H

Protein Properties

Length: 445aa MW: 47417.8 Da PI: 5.9244

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA02G38660.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	40.9	3.5e-13	372	395	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ktelC+ + r G C+yG+rC+FaHg ONIVA02G38660.1 372 KTELCNKWER-GACPYGARCRFAHG 395 8*******.***********9 PP
2	zf-CCCH	18.5	3.6e-06	408	434	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ykt +C+ fa+ C+yG rC+F H+p ONIVA02G38660.1 408 YKTLPCQMFAAASGCPYGHRCHFRHSP 434 9***********************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 445 aa Download sequence
MEGELSFVSP ARSSCFSFEG GGSGSPTWVS TVEALLRSPT SSVSDGGGGG GGGYNSPARA 60 SSPLQKQIPD CRDAGDFSSL TWASTLEKPL ESPSSCISDG RGGGFGSPTS AFPPEKLLIS 120 PPTCVSDNRG VGNGGGFPSL PWASSLERLL TSPSSCVSDS RGVGNADGFP SLPWASSLEK 180 PLTSPSSCVS DGRSGGYSSP LGASAERERE VREAEMLLRA IAERYDDCFL RLRDAAAELS 240 DLHRERLRLA AENLHLSLLL EELESEQRKQ ASAMAPPKLE EDEAAQGGAP KSISIRSPGY 300 LSQKQPQGQA RPQRLRVRAS QAMEISHPNC LIFVMGNQCS PKEAAAAGDE EDEEDKGGGE 360 VEVEAYRQGA AKTELCNKWE RGACPYGARC RFAHGLQELR PVIRHPRYKT LPCQMFAAAS 420 GCPYGHRCHF RHSPLRAAAA ESFCY

Sequence ? help Back to Top

Protein Sequence Length: 445 aa Download sequence

MEGELSFVSP ARSSCFSFEG GGSGSPTWVS TVEALLRSPT SSVSDGGGGG GGGYNSPARA  60
SSPLQKQIPD CRDAGDFSSL TWASTLEKPL ESPSSCISDG RGGGFGSPTS AFPPEKLLIS  120
PPTCVSDNRG VGNGGGFPSL PWASSLERLL TSPSSCVSDS RGVGNADGFP SLPWASSLEK  180
PLTSPSSCVS DGRSGGYSSP LGASAERERE VREAEMLLRA IAERYDDCFL RLRDAAAELS  240
DLHRERLRLA AENLHLSLLL EELESEQRKQ ASAMAPPKLE EDEAAQGGAP KSISIRSPGY  300
LSQKQPQGQA RPQRLRVRAS QAMEISHPNC LIFVMGNQCS PKEAAAAGDE EDEEDKGGGE  360
VEVEAYRQGA AKTELCNKWE RGACPYGARC RFAHGLQELR PVIRHPRYKT LPCQMFAAAS  420
GCPYGHRCHF RHSPLRAAAA ESFCY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68200.2	3e-32	C3H family protein

Link Out ? help Back to Top
Ensembl	ONIVA02G38660.1