PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA02G37300.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

MYB

Protein Properties

Length: 566aa MW: 58925.7 Da PI: 6.1632

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA02G37300.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.5	2.1e-15	212	260	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+ ++++ G+g +W + ++++g++R++k+c++rw++yl ONIVA02G37300.1 212 KGPWSPEEDAKLKAYIEENGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 260 79*********************************************97 PP
2	Myb_DNA-binding	38.1	3.7e-12	267	309	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T+eE+ ++ + G++ W+ Ia+ ++ gRt++++k++w++ ONIVA02G37300.1 267 GDFTEEEEHIICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 309 789****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 566 aa Download sequence
MAAAAARDDD LGNDDLDDDR SNPRRQSGGR TAGPIRQGLH GGIGLQMTAA MAGDDANDGG 60 HGWRRWLSTA AVAAVLLSLG DGGDDDKATE GIRGSSAGMY TDKRSVSEDT HLYPSTKPTI 120 KPARPQPQMH PLTAAAKHAI TIPPPPPPAA AASYTSSPSS GTSDPSVLDL SSAEIDDDGD 180 GDDDRAEQQE IKNSKELVMG RAPCCDKASV KKGPWSPEED AKLKAYIEEN GTGGNWIALP 240 QKIGLKRCGK SCRLRWLNYL RPNIKHGDFT EEEEHIICSL YISIGSRWSI IAAQLPGRTD 300 NDIKNYWNTK LKKKLLGKRA PSRRARANQD HCGLAGGAAA AMCGGVGTAA AAAAPHQALS 360 SSALERIQLH MRLQGLYNSA FGCTTTSSNG GGVGVAPPQW PKLEALLPSR PLPAVQPTDA 420 VVATVQHPHH LVVGGHTLAT AAAAAATTSE AFQAAEHLDP AAATGSNYMP GVAGVEMTSS 480 SSMAGGGGFV AGYGLHDELY DFLFKCESIG GAQGGIIPSS LPELQCPDGS AIIGADEKFS 540 TWTSSSCDYG SGGAGDYVLG THYLAV

Sequence ? help Back to Top

Protein Sequence Length: 566 aa Download sequence

MAAAAARDDD LGNDDLDDDR SNPRRQSGGR TAGPIRQGLH GGIGLQMTAA MAGDDANDGG  60
HGWRRWLSTA AVAAVLLSLG DGGDDDKATE GIRGSSAGMY TDKRSVSEDT HLYPSTKPTI  120
KPARPQPQMH PLTAAAKHAI TIPPPPPPAA AASYTSSPSS GTSDPSVLDL SSAEIDDDGD  180
GDDDRAEQQE IKNSKELVMG RAPCCDKASV KKGPWSPEED AKLKAYIEEN GTGGNWIALP  240
QKIGLKRCGK SCRLRWLNYL RPNIKHGDFT EEEEHIICSL YISIGSRWSI IAAQLPGRTD  300
NDIKNYWNTK LKKKLLGKRA PSRRARANQD HCGLAGGAAA AMCGGVGTAA AAAAPHQALS  360
SSALERIQLH MRLQGLYNSA FGCTTTSSNG GGVGVAPPQW PKLEALLPSR PLPAVQPTDA  420
VVATVQHPHH LVVGGHTLAT AAAAAATTSE AFQAAEHLDP AAATGSNYMP GVAGVEMTSS  480
SSMAGGGGFV AGYGLHDELY DFLFKCESIG GAQGGIIPSS LPELQCPDGS AIIGADEKFS  540
TWTSSSCDYG SGGAGDYVLG THYLAV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57620.1	3e-78	MYB family protein

Link Out ? help Back to Top
Ensembl	ONIVA02G37300.1