PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA02G35500.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

C3H

Protein Properties

Length: 669aa MW: 72857.8 Da PI: 6.7427

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA02G35500.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.1	2.3e-06	121	141	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ + G+C+ G++C++ H+ ONIVA02G35500.1 121 ECNMYKM-GFCPNGPNCRYKHV 141 6666666.*************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 669 aa Download sequence
MDDGDLSFDF EGGLDQGPAG GGGGPAPHSS DPGGVGGGGV GGGGGGGPGD GGGHGRGRGR 60 GSYRQTVCRH WLRGLCMKGE ACGFLHQFDK ARMPVCRFFR DFGECREPDC AYKHSYDDVK 120 ECNMYKMGFC PNGPNCRYKH VKLPGPPPPV EEVLQKILQI RSFNKFNQHR HNNYNQQGER 180 PQHPQGSGLP NQNSIDNTTT TTAQPAVGQQ AQTTNQQPPQ QQQQQQQQQQ QQQKPNTNDQ 240 VQSVPNGSSN QATRIATPLP QGPSRYFIVK SCNRENLEIS VQQGIWATQR SNEAKLNEAF 300 ESIENVILIF SINRTRNFQG CAKMTSRIGG YIGGGNWKSA HGTAHYGRNF SIQWLKLCEL 360 SFQKTHHLRN PYNDNLPVKI SRDCQELEPF IGEQLASLLY LEPDSELTAI LIAAEAKKEE 420 EKAKGVSADE AADNQDIVLF DDNEEEEEEE SEEEEEGNGQ ESQGRGRGRG MMWPPQMPML 480 RGVGPMMGGR GFPPNMIGDG FSFGGGFGMP DPFGVPRGFP PFGPRFPGDF ARGGPMPGMV 540 FPGRPPQPGG MFPMGLEMMM GPGRGPLMGG LGMGGPGRPN RPVGMAPFMP PPPPPNNRGT 600 KREQRRPGGE RGDRYETTSD QGSRGHDATG NSGAEGARSQ SGDRYGRSAL RDDDSESDEE 660 AAPRRSRKR

Sequence ? help Back to Top

Protein Sequence Length: 669 aa Download sequence

MDDGDLSFDF EGGLDQGPAG GGGGPAPHSS DPGGVGGGGV GGGGGGGPGD GGGHGRGRGR  60
GSYRQTVCRH WLRGLCMKGE ACGFLHQFDK ARMPVCRFFR DFGECREPDC AYKHSYDDVK  120
ECNMYKMGFC PNGPNCRYKH VKLPGPPPPV EEVLQKILQI RSFNKFNQHR HNNYNQQGER  180
PQHPQGSGLP NQNSIDNTTT TTAQPAVGQQ AQTTNQQPPQ QQQQQQQQQQ QQQKPNTNDQ  240
VQSVPNGSSN QATRIATPLP QGPSRYFIVK SCNRENLEIS VQQGIWATQR SNEAKLNEAF  300
ESIENVILIF SINRTRNFQG CAKMTSRIGG YIGGGNWKSA HGTAHYGRNF SIQWLKLCEL  360
SFQKTHHLRN PYNDNLPVKI SRDCQELEPF IGEQLASLLY LEPDSELTAI LIAAEAKKEE  420
EKAKGVSADE AADNQDIVLF DDNEEEEEEE SEEEEEGNGQ ESQGRGRGRG MMWPPQMPML  480
RGVGPMMGGR GFPPNMIGDG FSFGGGFGMP DPFGVPRGFP PFGPRFPGDF ARGGPMPGMV  540
FPGRPPQPGG MFPMGLEMMM GPGRGPLMGG LGMGGPGRPN RPVGMAPFMP PPPPPNNRGT  600
KREQRRPGGE RGDRYETTSD QGSRGHDATG NSGAEGARSQ SGDRYGRSAL RDDDSESDEE  660
AAPRRSRKR

Link Out ? help Back to Top
Ensembl	ONIVA02G35500.1