PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA02G35500.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C3H
Protein Properties Length: 669aa    MW: 72857.8 Da    PI: 6.7427
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA02G35500.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.12.3e-06121141526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      +C+ +   G+C+ G++C++ H+
  ONIVA02G35500.1 121 ECNMYKM-GFCPNGPNCRYKHV 141
                      6666666.*************7 PP

Sequence ? help Back to Top
Protein Sequence    Length: 669 aa     Download sequence    
MDDGDLSFDF EGGLDQGPAG GGGGPAPHSS DPGGVGGGGV GGGGGGGPGD GGGHGRGRGR  60
GSYRQTVCRH WLRGLCMKGE ACGFLHQFDK ARMPVCRFFR DFGECREPDC AYKHSYDDVK  120
ECNMYKMGFC PNGPNCRYKH VKLPGPPPPV EEVLQKILQI RSFNKFNQHR HNNYNQQGER  180
PQHPQGSGLP NQNSIDNTTT TTAQPAVGQQ AQTTNQQPPQ QQQQQQQQQQ QQQKPNTNDQ  240
VQSVPNGSSN QATRIATPLP QGPSRYFIVK SCNRENLEIS VQQGIWATQR SNEAKLNEAF  300
ESIENVILIF SINRTRNFQG CAKMTSRIGG YIGGGNWKSA HGTAHYGRNF SIQWLKLCEL  360
SFQKTHHLRN PYNDNLPVKI SRDCQELEPF IGEQLASLLY LEPDSELTAI LIAAEAKKEE  420
EKAKGVSADE AADNQDIVLF DDNEEEEEEE SEEEEEGNGQ ESQGRGRGRG MMWPPQMPML  480
RGVGPMMGGR GFPPNMIGDG FSFGGGFGMP DPFGVPRGFP PFGPRFPGDF ARGGPMPGMV  540
FPGRPPQPGG MFPMGLEMMM GPGRGPLMGG LGMGGPGRPN RPVGMAPFMP PPPPPNNRGT  600
KREQRRPGGE RGDRYETTSD QGSRGHDATG NSGAEGARSQ SGDRYGRSAL RDDDSESDEE  660
AAPRRSRKR