PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA02G30830.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | C3H | ||||||||
Protein Properties | Length: 395aa MW: 42131.6 Da PI: 8.5463 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.8 | 3.3e-07 | 112 | 133 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++Cr+f++ G C+yG++C++ H+ ONIVA02G30830.1 112 RPCRYFLA-GDCSYGEKCRYPHS 133 79******.***********887 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 395 aa Download sequence |
MDIETDGRFG NKRVHHRLGP ANGAASSSTS GKVCIHWRAG RCNRFPCPYL HSELPEATAK 60 RPSQSGGGGN VWRNPHSGGG GGRGAGGAGG PNKWGRGPGG ADGGPRHKVP DRPCRYFLAG 120 DCSYGEKCRY PHSYSMSDSI TMLTPLQGHE KVVTGIALPA GSDKLYSGSK DGTVRMWDCQ 180 TGQCAGVINM GREIGCMISE GPWLFVGIPD AVKVWNMQTQ AEMNLTGPTG QVYALAVGNE 240 LLFAATQDGR ILAWRFSAAT NGFEPAASLV GHQLAVVSLV VGAMRLYSGS MDKTIRVWAA 300 TESGSLEVTY THKEEHGALA LSGMPDAQSK PVLLCSLNDN TVRLYDLPSF SDRGRIFSKQ 360 EIRAIQVGPS GLFFTGDGTG ELKVWQWVID GSQTK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51980.1 | 1e-156 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | ONIVA02G30830.1 |