PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA02G30280.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

C2H2

Protein Properties

Length: 615aa MW: 63563.7 Da PI: 8.6313

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA02G30280.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.5e-05	95	117	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F r nL+ H r H ONIVA02G30280.1 95 FVCEVCNKGFQREQNLQLHRRGH 117 89*******************88 PP
2	zf-C2H2	11.5	0.00091	172	194	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H + + ONIVA02G30280.1 172 WKCDKCSKRYAVQSDWKAHSKIC 194 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 615 aa Download sequence
MASNSSAAAV AALFGIRDGD HEDQIKPLFA QQQQHHHHQP PMAPSNAAAA ASAAGSAAGQ 60 AAVAAPPAKK KRTLPDPDAE VIALSPKTLL ATNRFVCEVC NKGFQREQNL QLHRRGHNLP 120 WKLKQKNPLQ AQRRRVYLCP EPTCVHHDPS RALGDLTGIK KHFCRKHGEK KWKCDKCSKR 180 YAVQSDWKAH SKICGTREYR CDCGTLFSRR DSFITHRAFC DALAQESARL PPAAAGHLYG 240 SAGAANMALS LSQVGSHLAS TLQDHGHHHH HHGASPDLLR FGGSGGGAMA ARLEHLLSSS 300 SASALRPLPP PQQQPPAPFL LGAAPQGFGD GGDGSGPHGF LQGKPFHGLM QLPDLQGNGT 360 GGPSPSGPGL YNLGYIANSA NSSGTSSHGH ASQGQMTNTD QFSEGGGGGG GGGGSETSAA 420 ALFGAGGNFS GGDHHQVSPA GMYANDQAMM LPQMSATALL QKAAQMGSST SSANGAGASV 480 FGGGFAGSSA PSSIPHGRGT TMVDQGQMHL QSLMNSLAGG GNADHQGMFG SGSMIDPRLY 540 DMDQHEVKFS LQRGGGGGGD GDVTRDFLGV GGGGFMRGMS MARGEHHGGG GSDMHGTLEA 600 EMKSASSSFN GGRMQ

Sequence ? help Back to Top

Protein Sequence Length: 615 aa Download sequence

MASNSSAAAV AALFGIRDGD HEDQIKPLFA QQQQHHHHQP PMAPSNAAAA ASAAGSAAGQ  60
AAVAAPPAKK KRTLPDPDAE VIALSPKTLL ATNRFVCEVC NKGFQREQNL QLHRRGHNLP  120
WKLKQKNPLQ AQRRRVYLCP EPTCVHHDPS RALGDLTGIK KHFCRKHGEK KWKCDKCSKR  180
YAVQSDWKAH SKICGTREYR CDCGTLFSRR DSFITHRAFC DALAQESARL PPAAAGHLYG  240
SAGAANMALS LSQVGSHLAS TLQDHGHHHH HHGASPDLLR FGGSGGGAMA ARLEHLLSSS  300
SASALRPLPP PQQQPPAPFL LGAAPQGFGD GGDGSGPHGF LQGKPFHGLM QLPDLQGNGT  360
GGPSPSGPGL YNLGYIANSA NSSGTSSHGH ASQGQMTNTD QFSEGGGGGG GGGGSETSAA  420
ALFGAGGNFS GGDHHQVSPA GMYANDQAMM LPQMSATALL QKAAQMGSST SSANGAGASV  480
FGGGFAGSSA PSSIPHGRGT TMVDQGQMHL QSLMNSLAGG GNADHQGMFG SGSMIDPRLY  540
DMDQHEVKFS LQRGGGGGGD GDVTRDFLGV GGGGFMRGMS MARGEHHGGG GSDMHGTLEA  600
EMKSASSSFN GGRMQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02670.1	1e-103	C2H2 family protein

Link Out ? help Back to Top
Ensembl	ONIVA02G30280.1