PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA02G29150.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

C2H2

Protein Properties

Length: 341aa MW: 35282.2 Da PI: 5.5842

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA02G29150.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.8	8.3e-05	6	26	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ C ++F ++ L H+r+H ONIVA02G29150.1 6 CKLCYRRFASPRALAGHMRSH 26 ********************9 PP
2	zf-C2H2	11.4	0.00099	198	220	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C+k+F++ L H +H ONIVA02G29150.1 198 FQCPACKKVFRSYQALGGHRASH 220 89**********99999998887 PP
3	zf-C2H2	10.9	0.0014	262	284	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C ++F + L H ++H ONIVA02G29150.1 262 HECPYCYRVFASGQALGGHKKSH 284 79************999999998 PP

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence
MAKNACKLCY RRFASPRALA GHMRSHSVAA ANAAAAAAAA AAAKLQISSA SSASTSFTAA 60 DEEEEEEEEE EDVGFKKPLS IYALRENPKR SLRVSEYAFS DRESEAESTP TPAAKGLRAG 120 GGGGGGDGEP MSSLSYAGTP EEEVALALMM LSRDTWPSVE RGGGGGEYSD DGSDDGYALP 180 PPSPAPAPAP VPEKRTRFQC PACKKVFRSY QALGGHRASH VRGGRGGCCA PPVAPPPQPH 240 PQPPLPEHDA GEEDMDGKAP PHECPYCYRV FASGQALGGH KKSHVCSAAA AAAHAQTLGG 300 GAPPPQPKIL GMIDLNFAPP VDEVELSAVS DPHFPSNPPG P

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60580.1	5e-23	C2H2 family protein

Link Out ? help Back to Top
Ensembl	ONIVA02G29150.1