PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA02G29140.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

C2H2

Protein Properties

Length: 619aa MW: 65795.6 Da PI: 6.3981

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA02G29140.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.6	9.5e-05	119	136	2	19
EETTTTEEESSHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrH 19 +C++Cgk F+++ +L H ONIVA02G29140.1 119 TCENCGKEFTSWKTLLDH 136 6***************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 619 aa Download sequence
MAMVVAGSHR PPPPPQSLRL VPPPPPQPPP PPLTYRHHCK VCKKGFMCGR ALGGHMRAHG 60 IGDDNDTMDD DDGRDDDHSL SPCDGGGEPS EAAGSPTTTT TKRMYALRTN PGRPRNCRTC 120 ENCGKEFTSW KTLLDHGRCG LDEEDGRLDV SLRSPPLHDG GDENDGEDEE EGDDLTLAAG 180 GWSKGKRSRR AKVMAVGTGS VSELQLPAPS TEEEDLANFL VMLSSSSSTS SRVAQPAIVV 240 DDADQESCAS GSKDEERNRF LVPQPISMAA PMMAQMTVIA PQVVPQHIST VPRGMFECKA 300 CRKVFTSHQA LGGHRASHKK VKGCFAAKLE SSRNETSQTQ TQQQHVSAAP HDNTRATTSH 360 VITSDISMDA NTIGASADAD GKAAASGVGA GEIVLAGASS TDMAMMMSVE DFAPTPLAPS 420 AVSPFKKKGK VHECSICHRV FTSGQALGGH KRCHWLTSGA TDPLTKLQPV AQDHAMMAAM 480 CHQLTLGRPI FDPTDQRILD LNVPTNPLAE AVAARQQQQQ QVAALNDGAL CLNAAASVYL 540 QSWTGHSNGS HVNKTTATSS RLNDAAGGVT TEDDEADSTS AKRAKIGDLK DMKVAGESLP 600 WLQVGIRISS ESKEKNTQE

Sequence ? help Back to Top

Protein Sequence Length: 619 aa Download sequence

MAMVVAGSHR PPPPPQSLRL VPPPPPQPPP PPLTYRHHCK VCKKGFMCGR ALGGHMRAHG  60
IGDDNDTMDD DDGRDDDHSL SPCDGGGEPS EAAGSPTTTT TKRMYALRTN PGRPRNCRTC  120
ENCGKEFTSW KTLLDHGRCG LDEEDGRLDV SLRSPPLHDG GDENDGEDEE EGDDLTLAAG  180
GWSKGKRSRR AKVMAVGTGS VSELQLPAPS TEEEDLANFL VMLSSSSSTS SRVAQPAIVV  240
DDADQESCAS GSKDEERNRF LVPQPISMAA PMMAQMTVIA PQVVPQHIST VPRGMFECKA  300
CRKVFTSHQA LGGHRASHKK VKGCFAAKLE SSRNETSQTQ TQQQHVSAAP HDNTRATTSH  360
VITSDISMDA NTIGASADAD GKAAASGVGA GEIVLAGASS TDMAMMMSVE DFAPTPLAPS  420
AVSPFKKKGK VHECSICHRV FTSGQALGGH KRCHWLTSGA TDPLTKLQPV AQDHAMMAAM  480
CHQLTLGRPI FDPTDQRILD LNVPTNPLAE AVAARQQQQQ QVAALNDGAL CLNAAASVYL  540
QSWTGHSNGS HVNKTTATSS RLNDAAGGVT TEDDEADSTS AKRAKIGDLK DMKVAGESLP  600
WLQVGIRISS ESKEKNTQE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17180.1	6e-12	C2H2 family protein

Link Out ? help Back to Top
Ensembl	ONIVA02G29140.1