PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA02G28400.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 261aa MW: 28481.3 Da PI: 4.6582 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.8 | 3.7e-18 | 65 | 118 | 4 | 56 |
-SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ft+eq++ Le+ F+ ++ +e++eLA++lgL+ rqV +WFqN+Ra+++ ONIVA02G28400.1 65 KRRFTEEQVRSLETTFHArRAKLEPREKAELARELGLQPRQVAIWFQNKRARWR 118 458**************8899********************************9 PP | |||||||
2 | HD-ZIP_I/II | 122.3 | 2.3e-39 | 63 | 156 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 e+krr+++eqv++LE++F++++ kLep++K+elareLglqprqva+WFqn+RAR+++kq+E+dy+aL+++ydal+++ e+L++e+ +L+++++e ONIVA02G28400.1 63 ERKRRFTEEQVRSLETTFHARRaKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQIEHDYAALRAQYDALHARVESLRQEKLALAAQVDE 156 69*****************9999******************************************************************99976 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence |
MESDCQFLVA PPQPHMYYDT AAAAVDEAQF LRQMVAAADH HAAAAGRGGG DGDGGGGGGG 60 GGERKRRFTE EQVRSLETTF HARRAKLEPR EKAELARELG LQPRQVAIWF QNKRARWRSK 120 QIEHDYAALR AQYDALHARV ESLRQEKLAL AAQVDELRGK LNERQDQSGS CDGGGAEGDD 180 DDKRNSVMNA SSSGLVEEDY VSCLAVPVVD VSEDGSAACG GSSYEYDHHL DYLGGGQLPD 240 PFCGMPDLWE TWPMVEWNAV A |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.1 | 1e-32 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Ensembl | ONIVA02G28400.1 |